RNA id: TU2536382


Basic Information

Item Value
RNA id TU2536382
length 222
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2217476
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26671503 ~ 26671724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtgagacgtttacatacactcaattagtatttggtagcattgcctttaaattgtttatcttaggtcaaatgtttcaggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactaagtcaggtttgtaggcctccttgctcgcacacgctttttcagttctgcccacacattttctatagggt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536192 lncRNA upstream 272889 26373801 ~ 26398614 (+) False G2217304
TU2536193 lncRNA upstream 272889 26396793 ~ 26398614 (+) True G2217304
TU2536207 lncRNA upstream 280343 26390909 ~ 26391160 (+) True G2217315
TU2536191 lncRNA upstream 290709 26373801 ~ 26380794 (+) False G2217304
TU2536162 lncRNA upstream 346733 26318141 ~ 26324770 (+) True G2217277
TU2536283 lncRNA downstream 50261 26721985 ~ 26747486 (+) True LOC110521633
TU2536408 lncRNA downstream 57810 26729534 ~ 26729883 (+) True G2217502
TU2536296 lncRNA downstream 77817 26749541 ~ 26757367 (+) True G2217392
TU2536424 lncRNA downstream 97671 26769395 ~ 26770266 (+) False G2217517
TU2536423 lncRNA downstream 98223 26769947 ~ 26770266 (+) True G2217517
XM_036969107.1 mRNA upstream 169951 26477035 ~ 26501552 (+) False oma1
XM_036969109.1 mRNA upstream 169951 26477086 ~ 26501552 (+) False oma1
XM_036969108.1 mRNA upstream 169951 26477101 ~ 26501552 (+) True oma1
XM_021599313.2 mRNA upstream 193102 26457805 ~ 26478401 (+) True LOC110521630
XM_021599312.2 mRNA upstream 213784 26446447 ~ 26457719 (+) True LOC110521629
XM_036968689.1 mRNA downstream 24085 26695809 ~ 26795605 (+) False LOC110521633
XM_036968690.1 mRNA downstream 24085 26695809 ~ 26795605 (+) False LOC110521633
XM_036968683.1 mRNA downstream 24087 26695811 ~ 26795605 (+) False LOC110521633
XM_036968685.1 mRNA downstream 24087 26695811 ~ 26795605 (+) False LOC110521633
XM_036968687.1 mRNA downstream 24087 26695811 ~ 26795605 (+) False LOC110521633
TU2536346 other upstream 63560 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 538459 26127054 ~ 26133044 (+) True G2217159
TU2535314 other upstream 859197 25688091 ~ 25812306 (+) True LOC110521611
TU2535277 other upstream 1082988 25567840 ~ 25588515 (+) True LOC110522768
TU2535138 other upstream 1297893 25364252 ~ 25373610 (+) True G2216357
TU2536280 other downstream 50261 26721985 ~ 26752464 (+) False LOC110521633
TU2537501 other downstream 553650 27225374 ~ 27226305 (+) True G2218483
TU2537836 other downstream 826153 27497877 ~ 27502680 (+) False LOC110521646
TU2538093 other downstream 1166184 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 1622171 28293895 ~ 28307326 (+) True fip1l1a

Expression Profile