Item | Value |
---|---|
RNA id | TCONS_00005382 |
length | 728 |
lncRNA type | sense_over |
GC content | 0.45 |
exon number | 5 |
gene id | XLOC_002907 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007121.7 |
NCBI id | CM002894.2 |
chromosome length | 45420867 |
location | 34960751 ~ 35002731 (-) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0007179 | transforming growth factor beta receptor signaling pathway | biological_process |
GO:0006355 | regulation of transcription, DNA-templated | biological_process |
GO:0061515 | myeloid cell development | biological_process |
GO:0009953 | dorsal/ventral pattern formation | biological_process |
GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0016020 | membrane | cellular_component |
GO:0016021 | integral component of membrane | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0005515 | protein binding | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00005378 | lncRNA | downstream | 7895 | 34965764 ~ 34976723 (-) | False | XLOC_002907 |
TCONS_00005377 | lncRNA | downstream | 14715 | 34965764 ~ 34969903 (-) | False | XLOC_002907 |
TCONS_00005372 | lncRNA | downstream | 25440 | 34951060 ~ 34959178 (-) | False | XLOC_002906 |
TCONS_00005373 | lncRNA | downstream | 26594 | 34951231 ~ 34958024 (-) | True | XLOC_002906 |
TCONS_00005367 | lncRNA | downstream | 95598 | 34880648 ~ 34889020 (-) | True | XLOC_002904 |
TCONS_00006090 | lncRNA | upstream | 61853 | 35054281 ~ 35058444 (-) | True | XLOC_002909 |
TCONS_00005392 | lncRNA | upstream | 167582 | 35160010 ~ 35164291 (-) | True | XLOC_002912 |
TCONS_00005401 | lncRNA | upstream | 320464 | 35312892 ~ 35321637 (-) | True | XLOC_002917 |
TCONS_00006091 | lncRNA | upstream | 437076 | 35429504 ~ 35431655 (-) | True | XLOC_002919 |
TCONS_00005407 | lncRNA | upstream | 658156 | 35650584 ~ 35654680 (-) | False | XLOC_002923 |
TCONS_00005376 | mRNA | downstream | 3399 | 34961604 ~ 34981219 (-) | False | XLOC_002907 |
TCONS_00005375 | mRNA | downstream | 3590 | 34961604 ~ 34981028 (-) | False | XLOC_002907 |
TCONS_00005374 | mRNA | downstream | 7806 | 34960751 ~ 34976812 (-) | False | XLOC_002907 |
TCONS_00005369 | mRNA | downstream | 68410 | 34905980 ~ 34916208 (-) | False | XLOC_002905 |
TCONS_00005370 | mRNA | downstream | 68634 | 34908336 ~ 34915984 (-) | False | XLOC_002905 |
TCONS_00005384 | mRNA | upstream | 19666 | 35012094 ~ 35051691 (-) | False | XLOC_002908 |
TCONS_00005383 | mRNA | upstream | 19666 | 35012094 ~ 35051691 (-) | False | XLOC_002908 |
TCONS_00005385 | mRNA | upstream | 19666 | 35012094 ~ 35052198 (-) | False | XLOC_002908 |
TCONS_00005386 | mRNA | upstream | 19776 | 35012204 ~ 35030673 (-) | True | XLOC_002908 |
TCONS_00005387 | mRNA | upstream | 67428 | 35059856 ~ 35108683 (-) | False | XLOC_002910 |
TCONS_00005358 | other | downstream | 657224 | 34327262 ~ 34327394 (-) | True | XLOC_002902 |
TCONS_00005343 | other | downstream | 951197 | 34032283 ~ 34033421 (-) | True | XLOC_002893 |
TCONS_00005331 | other | downstream | 1607404 | 33377130 ~ 33377214 (-) | True | XLOC_002885 |
TCONS_00005330 | other | downstream | 1607532 | 33377001 ~ 33377086 (-) | True | XLOC_002884 |
TCONS_00005329 | other | downstream | 1607677 | 33376818 ~ 33376941 (-) | True | XLOC_002883 |
TCONS_00005403 | other | upstream | 377409 | 35369837 ~ 35387242 (-) | True | XLOC_002918 |
TCONS_00005406 | other | upstream | 627905 | 35620333 ~ 35620449 (-) | True | XLOC_002922 |
TCONS_00005408 | other | upstream | 661817 | 35654245 ~ 35654354 (-) | True | XLOC_002923 |
TCONS_00005410 | other | upstream | 1170751 | 36163179 ~ 36163294 (-) | True | XLOC_002926 |
TCONS_00005427 | other | upstream | 1495190 | 36487618 ~ 36502331 (-) | True | XLOC_002940 |