RNA id: TU2537174


Basic Information

Item Value
RNA id TU2537174
length 304
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G2218192
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26972265 ~ 26972568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactttattgaagcacctcgactgttcttgggtatgacactacaagtttgACACAGATacatttgggaagtttctccccttcttctctgcagatcctctcaagctctgtcaggttggacgggagcgtcgctgcacaggtctcaagtccggtctctggctgggccactcaaggacattcagagatttgtcccaaagccactcctgcattgtcttggctgtgtgcttagggtcgtagtcctgttggaaggtgaaccttttccccagtctgaggtcctgaacaatctggagcaggtttcagttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2536517 lncRNA upstream 6120 26965652 ~ 26966145 (+) True G2217601
TU2536516 lncRNA upstream 7361 26964686 ~ 26964904 (+) True G2217600
TU2536514 lncRNA upstream 8498 26963475 ~ 26963767 (+) True G2217598
TU2536293 lncRNA upstream 20687 26951115 ~ 26951578 (+) True G2217389
TU2536501 lncRNA upstream 23221 26948235 ~ 26949044 (+) False G2217589
TU2537212 lncRNA downstream 51686 27024254 ~ 27028729 (+) True usp24
TU2537309 lncRNA downstream 214007 27186575 ~ 27196779 (+) True G2218316
TU2537331 lncRNA downstream 238093 27210661 ~ 27210860 (+) True G2218332
TU2537500 lncRNA downstream 250302 27222870 ~ 27225123 (+) True G2218482
TU2537502 lncRNA downstream 253795 27226363 ~ 27227059 (+) True G2218484
XM_036969231.1 mRNA upstream 65847 26847423 ~ 26906418 (+) False plpp3
XM_021599321.2 mRNA upstream 65847 26847426 ~ 26906418 (+) True plpp3
XM_021599316.2 mRNA upstream 149933 26796230 ~ 26822332 (+) False LOC110521632
XM_021599317.2 mRNA upstream 149933 26796233 ~ 26822332 (+) True LOC110521632
XM_021599318.2 mRNA upstream 158395 26796202 ~ 26813870 (+) False LOC110521632
XM_036969176.1 mRNA downstream 51370 27023938 ~ 27076744 (+) False usp24
XM_036969179.1 mRNA downstream 51370 27023938 ~ 27076744 (+) False usp24
XM_036969180.1 mRNA downstream 51370 27023938 ~ 27076744 (+) False usp24
XM_036969177.1 mRNA downstream 51371 27023939 ~ 27076744 (+) False usp24
XM_036969178.1 mRNA downstream 51371 27023939 ~ 27076744 (+) False usp24
TU2536280 other upstream 219801 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 364322 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 839221 26127054 ~ 26133044 (+) True G2217159
TU2535314 other upstream 1159959 25688091 ~ 25812306 (+) True LOC110521611
TU2535277 other upstream 1383750 25567840 ~ 25588515 (+) True LOC110522768
TU2537501 other downstream 252806 27225374 ~ 27226305 (+) True G2218483
TU2537836 other downstream 525309 27497877 ~ 27502680 (+) False LOC110521646
TU2538093 other downstream 865340 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 1321327 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 1574970 28547538 ~ 28548084 (+) True G2219989

Expression Profile