RNA id: TU2538080


Basic Information

Item Value
RNA id TU2538080
length 239
lncRNA type intronic
GC content 0.53
exon number 1
gene id G2219003
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27811564 ~ 27811802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatcggactgagcttgttgtcattgcaggcaatctcaacgctgtgttacagggaagacatcctccctcatgtggtacccttcttgcaggctcatcctgacatgaccctccagcatgacaatgccaccagccatactgctcattctgtgcgtgatttcctgcaagacaggaatgtcagtgttctgccatggccagcgaagagcccggatctcaatcccattgagcacgtctgggacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538079 lncRNA upstream 1220 27809664 ~ 27810344 (+) True G2219002
TU2538024 lncRNA upstream 57293 27748073 ~ 27754271 (+) True G2218953
TU2537968 lncRNA upstream 119380 27690312 ~ 27692184 (+) True G2218907
TU2537878 lncRNA upstream 246387 27563811 ~ 27565177 (+) True G2218823
TU2537832 lncRNA upstream 292274 27514577 ~ 27519290 (+) True LOC110521646
TU2538082 lncRNA downstream 3720 27815522 ~ 27815767 (+) True G2219005
TU2538083 lncRNA downstream 4919 27816721 ~ 27816920 (+) True G2219006
TU2538107 lncRNA downstream 38834 27850636 ~ 27850965 (+) True G2219026
TU2538052 lncRNA downstream 42553 27854355 ~ 27855129 (+) False LOC110521658
TU2538051 lncRNA downstream 42665 27854467 ~ 27855190 (+) True LOC110521658
XM_021599355.2 mRNA upstream 126294 27672920 ~ 27685270 (+) True LOC110521654
XM_036968864.1 mRNA upstream 149216 27608444 ~ 27662348 (+) True LOC110521651
XR_005040961.1 mRNA upstream 229704 27571714 ~ 27581860 (+) True LOC118945810
XM_036968587.1 mRNA upstream 240178 27567817 ~ 27571386 (+) True LOC118945773
LOC110522774 mRNA upstream 270579 27540020 ~ 27540985 (+) True LOC110522774
XM_021599356.2 mRNA downstream 12112 27823914 ~ 27844041 (+) False LOC110521656
XM_036968756.1 mRNA downstream 12112 27823914 ~ 27844041 (+) False LOC110521656
XM_036968757.1 mRNA downstream 12112 27823914 ~ 27844041 (+) False LOC110521656
XM_036968758.1 mRNA downstream 12112 27823914 ~ 27844041 (+) False LOC110521656
XM_036968759.1 mRNA downstream 12112 27823914 ~ 27844041 (+) False LOC110521656
TU2537836 other upstream 308884 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 585259 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 1059100 26721985 ~ 26752464 (+) False LOC110521633
TU2536346 other upstream 1203621 26607523 ~ 26607943 (+) True G2217442
TU2536029 other upstream 1678520 26127054 ~ 26133044 (+) True G2217159
TU2538093 other downstream 26106 27837908 ~ 27843698 (+) True LOC110521656
TU2538335 other downstream 482093 28293895 ~ 28307326 (+) True fip1l1a
TU2539163 other downstream 735736 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 737227 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 1209784 29021586 ~ 29021882 (+) True G2220253

Expression Profile