RNA id: TU2538400


Basic Information

Item Value
RNA id TU2538400
length 399
lncRNA type antisense_over
GC content 0.61
exon number 2
gene id G2219302
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28335939 ~ 28337968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCCTGGGGCACACTGGCGTTCCTGGCATTATCTTGTTCCTCTGCGGTCTCATTGGACACGGAAGTGCCACTCTTGGTCCTCCGCAGGACACTGAAAGCACGGTTCAACCGCCTGAAGGAGCGGCTCCTGACCGAGGTGCGGTCATAGTTTCggatcttctTGGAACTGCTGCGGGCTGCCAGGCTTGTGGTGCTTCCTGATTGGCTGTTGTCCTCCATGCTGGGGTCGAAGGCAGGGTTGACGAGGCCGGGCTCGTCTGATAGGAGAGCGACCGCGGAGGAGGTGGGGCCATCGCCGGGCAGGGTGGCCACAGTGAGTTCTGATGTGCTGTCAGTGCAGTCCCCCTCCTGGGAACGTCGCTTCCTGTCGGCAGACAGGCCATAGTGAGACGCCCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2538325 lncRNA upstream 88144 28233933 ~ 28247795 (+) True G2219228
TU2538165 lncRNA upstream 349600 27983631 ~ 27986339 (+) True G2219075
TU2538157 lncRNA upstream 387214 27948513 ~ 27948725 (+) True G2219070
TU2538042 lncRNA upstream 476960 27857137 ~ 27858979 (+) False G2218968
TU2538043 lncRNA upstream 476960 27857137 ~ 27858979 (+) True G2218968
TU2538432 lncRNA downstream 32679 28370647 ~ 28371013 (+) True G2219327
TU2539138 lncRNA downstream 177001 28514969 ~ 28539699 (+) True G2219964
TU2539157 lncRNA downstream 203197 28541165 ~ 28541401 (+) True G2219983
TU2539158 lncRNA downstream 203620 28541588 ~ 28541906 (+) True G2219984
TU2539164 lncRNA downstream 210432 28548400 ~ 28548917 (+) True G2219990
XM_036968592.1 mRNA upstream 28401 28260831 ~ 28307538 (+) False fip1l1a
XM_021599402.2 mRNA upstream 28415 28260830 ~ 28307524 (+) False fip1l1a
XM_021599403.2 mRNA upstream 28415 28260831 ~ 28307524 (+) False fip1l1a
XM_021599398.2 mRNA upstream 239857 28093367 ~ 28096082 (+) True LOC110521663
XM_021599395.2 mRNA upstream 338048 27990515 ~ 27997891 (+) True spata18
XM_021599406.2 mRNA downstream 193987 28531955 ~ 28533455 (+) True gsx2
XM_021599407.2 mRNA downstream 217415 28555383 ~ 28576642 (+) True pdgfra
XM_036969494.1 mRNA downstream 289948 28627916 ~ 28667914 (+) False LOC110521672
XM_036969495.1 mRNA downstream 289948 28627916 ~ 28667914 (+) False LOC110521672
XM_036969496.1 mRNA downstream 289948 28627916 ~ 28667914 (+) True LOC110521672
TU2538335 other upstream 28613 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 492241 27837908 ~ 27843698 (+) True LOC110521656
TU2537836 other upstream 833259 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 1109634 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 1583475 26721985 ~ 26752464 (+) False LOC110521633
TU2539163 other downstream 209570 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 211061 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 683618 29021586 ~ 29021882 (+) True G2220253
TU2542282 other downstream 2525856 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 5234172 33572140 ~ 33604894 (+) True G2225948

Expression Profile