RNA id: TU2539158


Basic Information

Item Value
RNA id TU2539158
length 319
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G2219984
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28541588 ~ 28541906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAATGCCTTCAAAACTAGCCACTAGGGTGTGCGATTACCATCAAGTGGGCAGGGGTGGTGGAAGGGCGCTATCCCAGGACTCTGGTTCAGAAGGTTGCGTTATCAATCCCCAGGCAGGTTACCCATGATACTCAGTATTTGATGTCCATCCATGTTTAAAGAACATTGTGAGATGAAAtggaaaccagccactagggtCAAGTAGGTATGGTGGATGCATGcaagcatctgcctctggttaCATATTTGAATCCAGAAATAGACagttgttttaagcctatcccaaaccctTACCATGgtcattcagagttaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2539157 lncRNA upstream 187 28541165 ~ 28541401 (+) True G2219983
TU2539138 lncRNA upstream 1889 28514969 ~ 28539699 (+) True G2219964
TU2538432 lncRNA upstream 170575 28370647 ~ 28371013 (+) True G2219327
TU2538400 lncRNA upstream 203620 28335939 ~ 28337968 (+) True G2219302
TU2538325 lncRNA upstream 293793 28233933 ~ 28247795 (+) True G2219228
TU2539164 lncRNA downstream 6494 28548400 ~ 28548917 (+) True G2219990
TU2539202 lncRNA downstream 60729 28602635 ~ 28602844 (+) True G2220025
TU2539203 lncRNA downstream 64363 28606269 ~ 28606599 (+) True G2220026
TU2539208 lncRNA downstream 72013 28613919 ~ 28614126 (+) True G2220031
TU2539414 lncRNA downstream 410177 28952083 ~ 28952436 (+) True G2220223
XM_021599406.2 mRNA upstream 8133 28531955 ~ 28533455 (+) True gsx2
XM_036968592.1 mRNA upstream 234050 28260831 ~ 28307538 (+) False fip1l1a
XM_021599402.2 mRNA upstream 234064 28260830 ~ 28307524 (+) False fip1l1a
XM_021599403.2 mRNA upstream 234064 28260831 ~ 28307524 (+) False fip1l1a
XM_021599398.2 mRNA upstream 445506 28093367 ~ 28096082 (+) True LOC110521663
XM_021599407.2 mRNA downstream 13477 28555383 ~ 28576642 (+) True pdgfra
XM_036969494.1 mRNA downstream 86010 28627916 ~ 28667914 (+) False LOC110521672
XM_036969495.1 mRNA downstream 86010 28627916 ~ 28667914 (+) False LOC110521672
XM_036969496.1 mRNA downstream 86010 28627916 ~ 28667914 (+) True LOC110521672
XM_021599413.2 mRNA downstream 223457 28765363 ~ 28768625 (+) True srd5a3
TU2538335 other upstream 234262 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 697890 27837908 ~ 27843698 (+) True LOC110521656
TU2537836 other upstream 1038908 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 1315283 27225374 ~ 27226305 (+) True G2218483
TU2536280 other upstream 1789124 26721985 ~ 26752464 (+) False LOC110521633
TU2539163 other downstream 5632 28547538 ~ 28548084 (+) True G2219989
TU2539165 other downstream 7123 28549029 ~ 28549478 (+) True G2219991
TU2539452 other downstream 479680 29021586 ~ 29021882 (+) True G2220253
TU2542282 other downstream 2321918 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 5030234 33572140 ~ 33604894 (+) True G2225948

Expression Profile