RNA id: TU2539165


Basic Information

Item Value
RNA id TU2539165
length 450
RNA type TUCP
GC content 0.56
exon number 1
gene id G2219991
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 28549029 ~ 28549478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGGGCTAACTAGCCGTGCTGCTTGGAGTAAGGCCACTGCACCAGAGCGGCGGAAGATGGTAGTGCAGGAAGTACGCCATCAGGAGGAGGCTGCAAGGTGGGCCAAGGCAGTCTCTCTTTCCAAACAGGGACAGTGGACTCGATGGGATagtgtggagaagaggaagatcaGCTGGAAGGATCTGTGGGCCATGGAAGCGAGGCGGTTGAGCTTCTCCATCAGAGCAACATATGACGTCCTTCCAACTCCAGTTAATCTTCACCAATGGTATGGTGAAGATCCGGACTGTGCCCTCTGTTCCATGCCAGCCAACCTCAGGCACATTCTCACAGGGTGTAAAACAAGCCTCACCCAAGGACGCTACACTTGGCGTCACAACCAAGTCCTTAAAAACCTTGCGTCCGCCCTGGAGGACAAGCGAGCTGCCACCAACTCCCTACCACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2539164 lncRNA upstream 112 28548400 ~ 28548917 (+) True G2219990
TU2539158 lncRNA upstream 7123 28541588 ~ 28541906 (+) True G2219984
TU2539157 lncRNA upstream 7628 28541165 ~ 28541401 (+) True G2219983
TU2539138 lncRNA upstream 9330 28514969 ~ 28539699 (+) True G2219964
TU2538432 lncRNA upstream 178016 28370647 ~ 28371013 (+) True G2219327
TU2539202 lncRNA downstream 53157 28602635 ~ 28602844 (+) True G2220025
TU2539203 lncRNA downstream 56791 28606269 ~ 28606599 (+) True G2220026
TU2539208 lncRNA downstream 64441 28613919 ~ 28614126 (+) True G2220031
TU2539414 lncRNA downstream 402605 28952083 ~ 28952436 (+) True G2220223
TU2539415 lncRNA downstream 403115 28952593 ~ 28953950 (+) True G2220224
XM_021599406.2 mRNA upstream 15574 28531955 ~ 28533455 (+) True gsx2
XM_036968592.1 mRNA upstream 241491 28260831 ~ 28307538 (+) False fip1l1a
XM_021599402.2 mRNA upstream 241505 28260830 ~ 28307524 (+) False fip1l1a
XM_021599403.2 mRNA upstream 241505 28260831 ~ 28307524 (+) False fip1l1a
XM_021599398.2 mRNA upstream 452947 28093367 ~ 28096082 (+) True LOC110521663
XM_021599407.2 mRNA downstream 5905 28555383 ~ 28576642 (+) True pdgfra
XM_036969494.1 mRNA downstream 78438 28627916 ~ 28667914 (+) False LOC110521672
XM_036969495.1 mRNA downstream 78438 28627916 ~ 28667914 (+) False LOC110521672
XM_036969496.1 mRNA downstream 78438 28627916 ~ 28667914 (+) True LOC110521672
XM_021599413.2 mRNA downstream 215885 28765363 ~ 28768625 (+) True srd5a3
TU2539163 other upstream 945 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 241703 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 705331 27837908 ~ 27843698 (+) True LOC110521656
TU2537836 other upstream 1046349 27497877 ~ 27502680 (+) False LOC110521646
TU2537501 other upstream 1322724 27225374 ~ 27226305 (+) True G2218483
TU2539452 other downstream 472108 29021586 ~ 29021882 (+) True G2220253
TU2542282 other downstream 2314346 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 5022662 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 6632491 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 6968756 35518234 ~ 35519242 (+) True G2228777

Expression Profile