RNA id: TU2540212


Basic Information

Item Value
RNA id TU2540212
length 2016
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G2220937
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 29538068 ~ 29540285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAGACTTAAAAATAAGTGATATTGGCACATgatggagggaatgttggaacaTCAATAACAGAGGATCGGacattttttcaattttcgcctaaaatgacatacccaaatctaactgcctgtagctcaggacctgaagcaaggatatttggcattttttggtattttattaggatccccatttgctgttgcaaaagcagcagctactcttcctggggtccacacaaaacataatacagaatgacataatacagaacatcaatagacaagaacagcacAAGAACTGAACTACATAAAGAAATgttaaaggcacacgtagcctacatatcaatgcacacacacaaactatttaGGTCAACTagaggagaggcgttgtgccgtgaggtgttgctttctCTGCTTTTTGAATCCAGGTTTGCtctttatttgagcaatatgagatggaaggaagttccatgcaataagggctctatataatactgtacgctttctggAATTTGTTCTTGGGGACTGTGCATATTCTtaataccatttgaaagaaaacactttgaagtttgtggaaatgtgaaattaaatgtaggagaataacacattagatctggtaagataatacaaacaaaaaaaacatgcattttctaTACACACAGTAGTGTGTttgcaaagtttcagattgatccagtgaagcattgcaagtatgcccaaatgtgccgaattggtaaattgatacattttcaaatacataactatagagaacatacaaaaatgatatGATAATGCAAAATCTAAAGTTTATACACTCCCAGGAAtttcatacatgatggatcattggcctatacactaactttcacacatctagttGGCCAggtggggtgggtgtggagccagagacagcaggggttcaaactgtagaacccagttcctacatttgaatataaaaatagattttatcaaacaaaactatgctacattttatctctgtgaccctcaggatgacaaatcagagcaagactactgaatataagtacattatttaccttcagaggggAATGCATCAAACCAGTTCCGTGATaaaagttgttgttgttgttgcactctcctcaaacaatagcatgctattttttcactgtaatagttactgtaaattggacagcgcagtttgattaacaagaatttacgctttctgcccatataagacatgtctatgtcctggaaagtttacTGTTTTCTTACAATGTCATGCTAATTACATTATCATACATTATCTCAACCTCCCAGTATAGGATAATAACCAATAACAAAAATGTAcacttaatccagtataaactaatgtatagaatgtattataCAAAGAGAAAAATCGCATACGTcagcacaacggcagagtcatgtcttaagcGTAAAACTAAcaataatccatgccttctgcGGATGCTATGAAGTCCAAATGTTAGGGGCAGAGATAGAAAGTTGTCTGTCAGAAGTATCACAATGTAAATTCATTTTAATccatctgtctgcatatttcaagacatggcatttAAGTGAGCAGTGAGATACCCGATGGGTTGAATGATACTTTTCATCAATCATCTTGAAAAAAAATGCACACTTAACTGGAAATCAACTAATCCTCCATCACTAACACAATGGAAAAGTCCAATACTATGCGTTGGTGACAGAGTAAAACAAAATGGTACAGTTTGAGGCTATGTTGCGGAGAGTGATGCAGGAGAGatggggtgtgagcaggtgggtctggccAGGTGttatgtcattgatgtttgtgtgcgtctgtatGCTGTTGTTGGTATATgcatgttttgtattgtttgaaaaaagtaataaaatcttacaaaataaaatatattaacAGTTAACACATTTATAATTTTTGCTAACAATTCAGACATCTGTAATCtgattggcacacacacacacggattacACAATTGTCTTGTCTGACCACCGTCTATGGTACAGGGGAGTCAAGGGCTCACTCCTCCACAACCTCCTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2540123 lncRNA upstream 10936 29413156 ~ 29527132 (+) True G2220856
TU2540089 lncRNA upstream 127131 29351574 ~ 29410937 (+) True G2220823
TU2540035 lncRNA upstream 206102 29310575 ~ 29331966 (+) True G2220773
TU2540036 lncRNA upstream 217706 29308112 ~ 29320362 (+) True G2220774
TU2540033 lncRNA upstream 307275 29229989 ~ 29230793 (+) True G2220772
TU2540236 lncRNA downstream 35600 29575885 ~ 29576118 (+) True G2220957
TU2540239 lncRNA downstream 44584 29584869 ~ 29585073 (+) True G2220960
TU2540566 lncRNA downstream 89739 29630024 ~ 29630244 (+) True G2221272
TU2540574 lncRNA downstream 94568 29634853 ~ 29639083 (+) True G2221279
TU2540602 lncRNA downstream 132032 29672317 ~ 29691242 (+) True G2221307
XM_021599467.2 mRNA upstream 234128 29284901 ~ 29303940 (+) True LOC110521691
XM_021599453.2 mRNA upstream 384364 29130397 ~ 29153704 (+) False LOC100135939
XM_021599471.2 mRNA downstream 58265 29598550 ~ 29604909 (+) True LOC110521693
XR_005040924.1 mRNA downstream 995951 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 1306396 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 1306396 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 1306396 30846681 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 516186 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 988590 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 989984 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 1230742 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 1694370 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 1323539 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 4031855 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 5641684 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5977949 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 6153025 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile