RNA id: TU2540602


Basic Information

Item Value
RNA id TU2540602
length 1478
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G2221307
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 29672317 ~ 29691242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTTCGAAAGACTCTTTCCACCTCATGCATTCTTCCAGAGTAGGTCTAGTTTTGCCTATTTTGCAGCTTGATAGACTCCAGTTTGATTTTTGCAGAAAGTTGACCATTCTTGATTTCAGTTCCTTGGCCCTAAGAAGAGAGAATAATATCATAGGTAAGATAAATAATGCACAAGTCCTTGAATTGAGTCCTTGTTCAGTACAATATTTTGATACTAACTAGTCATTAACAAATCGAGAcatgtctcatcgctgcaagGTCTAAATTTAGAATCCACTAAAACCGCCTTCACTTTCATCATCACAGAAGCTGGAAAGCCAAATAATAATCCCCTTTAATCCTTTAATCCAAATGCCAGAGACAGCGACAGTGAAGAGTTGTATGTACCTTTCTAGGCAGGTGGAAGACAGAGCTAGTCCTTTGCACATAGTTGATGTGGATGCAGAGAGCGAATATTCCCCTCCATCTGTAGTGGCAACATGGCTCAACGTGATGAGTTTGGGAGCCTCAGGTTGACCATCTGCCTGACAGTTCTCAGGGGAAAAGGGGAAGAGCGGAAGGGAAGAGGTGGAGGAACCAACAGATGCTGCCTAGGCCTTGTTACACACTGTACTACTCCACCGGGACAGGCAATACAACCTCTGTCTCACCATCAACTGAAGGCCAACTTCAATCAAACACACTTTGCTATGTACTGGAAGTGGCATATGTAATATATGATGTAATGTTACGGAGTGCTGGGAAATCACTAGGGTGACACACCATGTACGCTTACAGCATTCAAAAGAAGCTGTGTGAGCAAGGCATGAATGTCCATGTGAATATAGACTAGTAAAAACATTGCTGCGGTAGGTTTGATTGCCATATAGGGCCCTGAGAGCCATCCCAGACCTGCAATAATgcatttattgtatttatttttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaccggcaaaacccagacgacgctgggtcaattgtgctcTGCCCTATGGGACTACGAATCATGTCTAGTTGTGACacagtctggattcgaaccagggtgtcatagtgacacctcaagcactgagatgcagtgccttagactgcttcGCCACTTGGGTGCCCAATAAGCTGCATTCCCATCATACACACTCTGAAAAAGTAAATATTCCATTGACATCACATGAACACTACAGACTTTAATATCACAATCAATCAGAGATAGTGGCCCCAATGTCCCTAATGCTTGTCTCCGACAGGACATGTTGCTATGCAAGTTCCATGTGTGTCGCAGAATCCTTTCATAGCATACTGACTGGGCTGAGACAGTATCTCTGTGACTGCATTGTCCTGTAATGTGATGATTGTTTTGTCTGTTTTATTGTCCTGTGATAAACTATTTCACAGCTCCTCAGCCTCAGAGGAGGGACTGAGTTTGACTAGGTTCCAGTAATGTGACGATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2540574 lncRNA upstream 33234 29634853 ~ 29639083 (+) True G2221279
TU2540566 lncRNA upstream 42073 29630024 ~ 29630244 (+) True G2221272
TU2540239 lncRNA upstream 87244 29584869 ~ 29585073 (+) True G2220960
TU2540236 lncRNA upstream 96199 29575885 ~ 29576118 (+) True G2220957
TU2540212 lncRNA upstream 132032 29538068 ~ 29540285 (+) True G2220937
TU2540641 lncRNA downstream 45181 29736423 ~ 29736626 (+) True G2221345
TU2540723 lncRNA downstream 50864 29742106 ~ 29742737 (+) True G2221420
TU2540745 lncRNA downstream 65202 29756444 ~ 29756803 (+) True G2221437
TU2540782 lncRNA downstream 88129 29779371 ~ 29779599 (+) True G2221474
TU2540786 lncRNA downstream 91098 29782340 ~ 29782579 (+) True G2221478
XM_021599471.2 mRNA upstream 67408 29598550 ~ 29604909 (+) True LOC110521693
XM_021599467.2 mRNA upstream 368377 29284901 ~ 29303940 (+) True LOC110521691
XM_036968497.1 mRNA upstream 518613 29130397 ~ 29153704 (+) False LOC100135939
XR_005040924.1 mRNA downstream 844994 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 1155439 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 1155439 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 1155439 30846681 ~ 30850528 (+) False LOC110521701
XM_021599483.2 mRNA downstream 1155441 30846683 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 650435 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 1122839 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 1124233 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 1364991 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 1828619 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 1172582 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 3880898 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 5490727 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5826992 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 6002068 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile