RNA id: TU2541393


Basic Information

Item Value
RNA id TU2541393
length 241
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G2222057
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30357493 ~ 30357733 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gatggtgtcatgtactgtcatgttgtgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttaccttttctcccccgctttcccccagctgttccttgtctcctctaactacccattcaccccgtttcccacctgttccctttttccctctgattaggtccctatatctctctctgtttctgttcctgtccttgtcggattcttgtttgttgtgtttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2541392 lncRNA upstream 1963 30355304 ~ 30355530 (+) True G2222056
TU2541189 lncRNA upstream 258090 30071562 ~ 30099403 (+) True G2221861
TU2541187 lncRNA upstream 287077 30069748 ~ 30070416 (+) True G2221859
TU2540979 lncRNA upstream 295384 29983221 ~ 30062109 (+) True G2221660
TU2541400 lncRNA downstream 28234 30385967 ~ 30386440 (+) True G2222064
TU2541409 lncRNA downstream 44829 30402562 ~ 30402772 (+) True G2222073
TU2541618 lncRNA downstream 46184 30403917 ~ 30404124 (+) True G2222275
TU2541633 lncRNA downstream 54349 30412082 ~ 30412310 (+) True G2222290
TU2541878 lncRNA downstream 203336 30561069 ~ 30561526 (+) True G2222519
XM_021599471.2 mRNA upstream 752584 29598550 ~ 29604909 (+) True LOC110521693
XM_021599467.2 mRNA upstream 1053553 29284901 ~ 29303940 (+) True LOC110521691
XM_036968497.1 mRNA upstream 1203789 29130397 ~ 29153704 (+) False LOC100135939
XR_005040924.1 mRNA downstream 178503 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 488948 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 488948 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 488948 30846681 ~ 30850528 (+) False LOC110521701
XM_021599483.2 mRNA downstream 488950 30846683 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 1335611 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 1808015 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 1809409 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 2050167 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 2513795 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 506091 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 3214407 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 4824236 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5160501 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 5335577 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile