RNA id: TU2541409


Basic Information

Item Value
RNA id TU2541409
length 211
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2222073
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30402562 ~ 30402772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctaagaagcttctaaagccaagacatcattttctgtaattctccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgactcactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaatgtacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaaaactatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2541400 lncRNA upstream 16122 30385967 ~ 30386440 (+) True G2222064
TU2541393 lncRNA upstream 44829 30357493 ~ 30357733 (+) True G2222057
TU2541392 lncRNA upstream 47032 30355304 ~ 30355530 (+) True G2222056
TU2541189 lncRNA upstream 303159 30071562 ~ 30099403 (+) True G2221861
TU2541187 lncRNA upstream 332146 30069748 ~ 30070416 (+) True G2221859
TU2541618 lncRNA downstream 1145 30403917 ~ 30404124 (+) True G2222275
TU2541633 lncRNA downstream 9310 30412082 ~ 30412310 (+) True G2222290
TU2541878 lncRNA downstream 158297 30561069 ~ 30561526 (+) True G2222519
TU2541886 lncRNA downstream 162664 30565436 ~ 30565649 (+) True G2222527
TU2541901 lncRNA downstream 171745 30574517 ~ 30574827 (+) True G2222542
XM_021599471.2 mRNA upstream 797653 29598550 ~ 29604909 (+) True LOC110521693
XM_021599467.2 mRNA upstream 1098622 29284901 ~ 29303940 (+) True LOC110521691
XM_036968497.1 mRNA upstream 1248858 29130397 ~ 29153704 (+) False LOC100135939
XR_005040924.1 mRNA downstream 133464 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 443909 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 443909 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 443909 30846681 ~ 30850528 (+) False LOC110521701
XM_021599483.2 mRNA downstream 443911 30846683 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 1380680 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 1853084 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 1854478 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 2095236 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 2558864 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 461052 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 3169368 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 4779197 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5115462 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 5290538 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile