RNA id: TU2541618


Basic Information

Item Value
RNA id TU2541618
length 208
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G2222275
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30403917 ~ 30404124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcactaggtccccctgtgtggttctgggatttttgctcaccgtttttgtgatcattttgaccccacggggtgagatcttgagtggagccccagattgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgctgacctattgcagattcagtcttcccagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2541409 lncRNA upstream 1145 30402562 ~ 30402772 (+) True G2222073
TU2541400 lncRNA upstream 17477 30385967 ~ 30386440 (+) True G2222064
TU2541393 lncRNA upstream 46184 30357493 ~ 30357733 (+) True G2222057
TU2541392 lncRNA upstream 48387 30355304 ~ 30355530 (+) True G2222056
TU2541189 lncRNA upstream 304514 30071562 ~ 30099403 (+) True G2221861
TU2541633 lncRNA downstream 7958 30412082 ~ 30412310 (+) True G2222290
TU2541878 lncRNA downstream 156945 30561069 ~ 30561526 (+) True G2222519
TU2541886 lncRNA downstream 161312 30565436 ~ 30565649 (+) True G2222527
TU2541901 lncRNA downstream 170393 30574517 ~ 30574827 (+) True G2222542
TU2541918 lncRNA downstream 182912 30587036 ~ 30587235 (+) True G2222559
XM_021599471.2 mRNA upstream 799008 29598550 ~ 29604909 (+) True LOC110521693
XM_021599467.2 mRNA upstream 1099977 29284901 ~ 29303940 (+) True LOC110521691
XM_036968497.1 mRNA upstream 1250213 29130397 ~ 29153704 (+) False LOC100135939
XR_005040924.1 mRNA downstream 132112 30536236 ~ 30548668 (+) True LOC110521700
XM_036969302.1 mRNA downstream 442557 30846681 ~ 30850528 (+) False LOC110521701
XM_036969303.1 mRNA downstream 442557 30846681 ~ 30850528 (+) False LOC110521701
XM_036969304.1 mRNA downstream 442557 30846681 ~ 30850528 (+) False LOC110521701
XM_021599483.2 mRNA downstream 442559 30846683 ~ 30850528 (+) False LOC110521701
TU2539452 other upstream 1382035 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 1854439 28549029 ~ 28549478 (+) True G2219991
TU2539163 other upstream 1855833 28547538 ~ 28548084 (+) True G2219989
TU2538335 other upstream 2096591 28293895 ~ 28307326 (+) True fip1l1a
TU2538093 other upstream 2560219 27837908 ~ 27843698 (+) True LOC110521656
TU2542282 other downstream 459700 30863824 ~ 30866522 (+) True LOC110521703
TU2545552 other downstream 3168016 33572140 ~ 33604894 (+) True G2225948
TU2548066 other downstream 4777845 35181969 ~ 35190151 (+) False LOC110521757
TU2548536 other downstream 5114110 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 5289186 35693310 ~ 35735400 (+) True LOC110521768

Expression Profile