Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00005386 |
| length | 766 |
| RNA type | mRNA |
| GC content | 0.59 |
| exon number | 7 |
| gene id | XLOC_002908 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 35012094 ~ 35052198 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0000124 | SAGA complex | cellular_component |
| GO:0003712 | transcription coregulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-091204-264 | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component). |
| ensembl_id | ENSDART00000135338 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005382 | lncRNA | downstream | 19776 | 34984618 ~ 34992428 (-) | True | XLOC_002907 |
| TCONS_00005378 | lncRNA | downstream | 35481 | 34965764 ~ 34976723 (-) | False | XLOC_002907 |
| TCONS_00005377 | lncRNA | downstream | 42301 | 34965764 ~ 34969903 (-) | False | XLOC_002907 |
| TCONS_00005372 | lncRNA | downstream | 53026 | 34951060 ~ 34959178 (-) | False | XLOC_002906 |
| TCONS_00006090 | lncRNA | upstream | 23608 | 35054281 ~ 35058444 (-) | True | XLOC_002909 |
| TCONS_00005392 | lncRNA | upstream | 129337 | 35160010 ~ 35164291 (-) | True | XLOC_002912 |
| TCONS_00005401 | lncRNA | upstream | 282219 | 35312892 ~ 35321637 (-) | True | XLOC_002917 |
| TCONS_00006091 | lncRNA | upstream | 398831 | 35429504 ~ 35431655 (-) | True | XLOC_002919 |
| TCONS_00005407 | lncRNA | upstream | 619911 | 35650584 ~ 35654680 (-) | False | XLOC_002923 |
| TCONS_00005380 | mRNA | downstream | 9473 | 34984617 ~ 35002731 (-) | False | XLOC_002907 |
| TCONS_00005379 | mRNA | downstream | 9745 | 34980486 ~ 35002459 (-) | False | XLOC_002907 |
| TCONS_00005376 | mRNA | downstream | 30985 | 34961604 ~ 34981219 (-) | False | XLOC_002907 |
| TCONS_00005375 | mRNA | downstream | 31176 | 34961604 ~ 34981028 (-) | False | XLOC_002907 |
| TCONS_00005374 | mRNA | downstream | 35392 | 34960751 ~ 34976812 (-) | False | XLOC_002907 |
| TCONS_00005387 | mRNA | upstream | 29183 | 35059856 ~ 35108683 (-) | False | XLOC_002910 |
| TCONS_00005388 | mRNA | upstream | 29212 | 35059885 ~ 35103208 (-) | True | XLOC_002910 |
| TCONS_00005389 | mRNA | upstream | 83480 | 35114153 ~ 35153388 (-) | False | XLOC_002911 |
| TCONS_00005390 | mRNA | upstream | 85497 | 35116170 ~ 35149516 (-) | False | XLOC_002911 |
| TCONS_00005391 | mRNA | upstream | 85499 | 35116172 ~ 35149513 (-) | True | XLOC_002911 |
| TCONS_00005381 | other | downstream | 19790 | 34984618 ~ 34992414 (-) | False | XLOC_002907 |
| TCONS_00005358 | other | downstream | 684810 | 34327262 ~ 34327394 (-) | True | XLOC_002902 |
| TCONS_00005343 | other | downstream | 978783 | 34032283 ~ 34033421 (-) | True | XLOC_002893 |
| TCONS_00005331 | other | downstream | 1634990 | 33377130 ~ 33377214 (-) | True | XLOC_002885 |
| TCONS_00005330 | other | downstream | 1635118 | 33377001 ~ 33377086 (-) | True | XLOC_002884 |
| TCONS_00005403 | other | upstream | 339164 | 35369837 ~ 35387242 (-) | True | XLOC_002918 |
| TCONS_00005406 | other | upstream | 589660 | 35620333 ~ 35620449 (-) | True | XLOC_002922 |
| TCONS_00005408 | other | upstream | 623572 | 35654245 ~ 35654354 (-) | True | XLOC_002923 |
| TCONS_00005410 | other | upstream | 1132506 | 36163179 ~ 36163294 (-) | True | XLOC_002926 |
| TCONS_00005427 | other | upstream | 1456945 | 36487618 ~ 36502331 (-) | True | XLOC_002940 |
