RNA id: TU2548292


Basic Information

Item Value
RNA id TU2548292
length 231
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2228552
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35340082 ~ 35340312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggtgtgatggtgtgggggtgctttgctggtgacactgtcagtgatttattttgaatttatttagatacgccatcccatctggtttgcgcttagtgggcccatcattcgtttttcaacaggacaatgacccaacacacctccaagctgtgtaagggctatttggccaagaaggagagtgatggagtgttgcatcaaatgacctggcctccacaatcacccaacctcaacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548285 lncRNA upstream 8642 35328894 ~ 35331440 (+) True G2228545
TU2548240 lncRNA upstream 63537 35276309 ~ 35276545 (+) True G2228502
TU2548226 lncRNA upstream 71267 35268538 ~ 35268815 (+) True G2228488
TU2548183 lncRNA upstream 88604 35240437 ~ 35251478 (+) False G2228447
TU2548181 lncRNA upstream 88604 35251113 ~ 35251478 (+) True G2228447
TU2548358 lncRNA downstream 10595 35350907 ~ 35351262 (+) True G2228618
TU2548370 lncRNA downstream 20923 35361235 ~ 35361470 (+) True G2228630
TU2548375 lncRNA downstream 26670 35366982 ~ 35367318 (+) True G2228635
TU2548376 lncRNA downstream 27810 35368122 ~ 35368472 (+) True G2228636
TU2548402 lncRNA downstream 132721 35473033 ~ 35476756 (+) True G2228660
XR_005040941.1 mRNA upstream 149873 35181902 ~ 35190209 (+) False LOC110521757
XR_005040942.1 mRNA upstream 149873 35181902 ~ 35190209 (+) False LOC110521757
XR_005040943.1 mRNA upstream 149873 35181902 ~ 35190209 (+) False LOC110521757
XM_036968940.1 mRNA upstream 223324 34960599 ~ 35116758 (+) True LOC118945793
XR_002473207.2 mRNA upstream 407445 34927630 ~ 34932637 (+) True LOC110521755
XM_036969306.1 mRNA downstream 65257 35405569 ~ 35492375 (+) False LOC110521760
XM_036969307.1 mRNA downstream 65257 35405569 ~ 35492375 (+) False LOC110521760
XM_036969308.1 mRNA downstream 65257 35405569 ~ 35492375 (+) False LOC110521760
XM_036969309.1 mRNA downstream 65257 35405569 ~ 35492375 (+) False LOC110521760
XM_036969310.1 mRNA downstream 65258 35405570 ~ 35492375 (+) True LOC110521760
TU2548066 other upstream 149931 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1735188 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4473560 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6318200 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 6790604 28549029 ~ 28549478 (+) True G2219991
TU2548536 other downstream 177922 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 352998 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 460720 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 2244714 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2983048 38323360 ~ 38336981 (+) True G2231371

Expression Profile