RNA id: TU2548370


Basic Information

Item Value
RNA id TU2548370
length 236
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G2228630
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35361235 ~ 35361470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTCTCAGTTTTCTGTCACGATTGGCTCAGTTGTCTGTCACTCATGGGACTGTATGTCATCCCCAACTCTACGTTGGTAGACTGTCAGCTCTCAGACCTTTGTGAGGAGGATGACACTGCAGACATATCACTTCTGTACTAGTAAGTCAAAAGAAGCTTTCCCCACGGTGCCAAGTACAGATCGGGGTTAGAGAGACTGGACAACAAGCAGTTGAGGCTGCAGACGGATTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548358 lncRNA upstream 9973 35350907 ~ 35351262 (+) True G2228618
TU2548292 lncRNA upstream 20923 35340082 ~ 35340312 (+) True G2228552
TU2548285 lncRNA upstream 29795 35328894 ~ 35331440 (+) True G2228545
TU2548240 lncRNA upstream 84690 35276309 ~ 35276545 (+) True G2228502
TU2548226 lncRNA upstream 92420 35268538 ~ 35268815 (+) True G2228488
TU2548375 lncRNA downstream 5512 35366982 ~ 35367318 (+) True G2228635
TU2548376 lncRNA downstream 6652 35368122 ~ 35368472 (+) True G2228636
TU2548402 lncRNA downstream 111563 35473033 ~ 35476756 (+) True G2228660
TU2548541 lncRNA downstream 164013 35525483 ~ 35525695 (+) True G2228782
TU2548544 lncRNA downstream 169399 35530869 ~ 35531082 (+) True G2228785
XR_005040941.1 mRNA upstream 171026 35181902 ~ 35190209 (+) False LOC110521757
XR_005040942.1 mRNA upstream 171026 35181902 ~ 35190209 (+) False LOC110521757
XR_005040943.1 mRNA upstream 171026 35181902 ~ 35190209 (+) False LOC110521757
XM_036968940.1 mRNA upstream 244477 34960599 ~ 35116758 (+) True LOC118945793
XR_002473207.2 mRNA upstream 428598 34927630 ~ 34932637 (+) True LOC110521755
XM_036969306.1 mRNA downstream 44099 35405569 ~ 35492375 (+) False LOC110521760
XM_036969307.1 mRNA downstream 44099 35405569 ~ 35492375 (+) False LOC110521760
XM_036969308.1 mRNA downstream 44099 35405569 ~ 35492375 (+) False LOC110521760
XM_036969309.1 mRNA downstream 44099 35405569 ~ 35492375 (+) False LOC110521760
XM_036969310.1 mRNA downstream 44100 35405570 ~ 35492375 (+) True LOC110521760
TU2548066 other upstream 171084 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1756341 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4494713 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6339353 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 6811757 28549029 ~ 28549478 (+) True G2219991
TU2548536 other downstream 156764 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 331840 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 439562 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 2223556 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2961890 38323360 ~ 38336981 (+) True G2231371

Expression Profile