RNA id: TU2548402


Basic Information

Item Value
RNA id TU2548402
length 3678
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2228660
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35473033 ~ 35476756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAATTAACCAACTCTGATGggcattcctacagtcagcatgccaattgcactctgtggcattgtgttgtgtgacaaacctgcacatgttagagtggccttttatattccacagacactggacagaggaacctAGAACgctagcatcccggagtcgcctcttcacttttGCTTTGCTCACACAAAGCCCCGGAAATAAATTGGTGGCACTGCACACAGTTTTCACGAGCCTTGTTTTGTGAGCACCTGCCACAGGTGTTGCATAATCTCTGGGAAGAGGTTGCGTGGGATGGTCTCTCTGAAAAAGTCCACACCATACCTATCAGACCAAAATAACTCCACATCCATGCTCTTACCGCCGTATGCCCCACAGACATACAAGAGTGCCATAAATGCTTTGAGTTCATCCATAGACATGTCCCACATACTGTTTATTTTTCTGTGCGCATGAGCAACAGTACAATCTTTGATGTGCTACAACATCTGCATGCCACATAAACTCGTCACTCTTTTCTACCCAAACCGTGccgtccctcccagactcctgtctcatgGTGGCAGTTGGGCTCACCGCCTCAGTTGGCTCTGTTCTGGTTTTTCCGCGGCGAGACTCAGGCATCGGAGACGGAGGCTCGAAGTCAACATCAGAATCAGATGAAGACTCTTCATCAGCAATGTCGATTTTCAAGCTCCATATTCGTTACTCCAATTCATCTAGTCTGTCAGTGCGTCCATTCGTTTGGTTCGGCTTGCCATTCTGAACTACACTCAGTGTCTGATTTGACTCTCCGATGGGAAATTATATACAATTTCCAGCCTTTCATAATACAATAATTAGACAGCCCACAATTCATCATCattacactattgttctaaattcaatcatCCTCTTAACCCTCATTATTCAGATAAATCTAGTTTAATCACCctcctcatcattcagttcattGAAGTCACATGCaccattatcagtttctatttggttTCTATCGCCCATTCATCCATTGATAACAGAATAGCATATTTAAATGTTATTAGGTTACTAGTATTTGCTTAGTAGCCACCGCAATGCTGCCACtcgagtggtcatgtgctgaatgcatgGACAGCACGGATATTCTTGGAAAAAGTGACATTGGTAAATAGAGATGCACCTCTTGAATTTGAGAGTTATTTGACAAAGGTACATGTCATAGAAGCTGCAGAACATGCTCTTTCTGATACTATATAGAAATTGATACTCCTTTCCCTCTATCTGTCAATTACAAGATGCGCCCATCTCATCATGTACAAACTGATAGGCCTAATATTGTCACTCGTCAGATTAATGTAAATGTTATCTTGTCTATAGGCTAACTCTTATTATGTGTGAAATTAATTTCGGTGTCGTTTCAATGGGCCGGCTGTGCAGGCATTGTTTGTTTCCCGCTCATCAACTTGGATAGAGTCAAGGAAATGTTTTGCAGTGGACTTCCGCTCGGGCGATGTACGAAGACGTTTTTGAGAGAGGTCCCTAATTAAAACTTAAATTTTTACGTTTTTAGACACCGCTGTTTTTCTGTTGCTGTATCGGTTGGTTATATTATTTGAATAATTTTTTATGGTACCATGAGCTAGACCAACCCGAAGAGAACTGCTACAACCAACACATCGTCGAAGGCCGAACCAACTACTCGAACACTGAAAATGGCTGCCACGGCCAGCCCTGATGCAGAGTCGGAGCCCTTGTCTATGACCACGCTTGTAGCTGAGCTAGCTAAACAAATAAGTAGCCTAAAAGAGGATATGGCTTCTGTCATCAGCCCTTCGCTGGCACCTCTCCAAACTTCCGTTGATGCCTTTTGGGAAATAGTCAACACTTTTGGGCACTCACTACACGAGAAGGTTTCTCCACTAACAACGCCAAGCATATTGCCGAGCTAGTAGAGGCAGCTGCCTCGCATATGGGTAGATTCGTTGGAGAATTAAACCAGAAGGGAAAGTATCTGGATCGTTGAGACTAGTCAACCCTGTGAAATTTGTCTCTGACATGCTGGTAGTAGTGATGGGAAATGGTGTCTCGCCCGAACACACAGATCTCTCGCCCCCAATCCCAGCTCAGGGGAGCAGCCTAGGGCAATCATAGCCCACTTTCATCATTACCAAGATTAGGAACGTGCAATGCGCTGGGCGAGGGAGCAAAATTCCGTGGCCAAGATATATGATTCTACCTGGACCTGTGTGCCAACCTCGTGAAGCTGAATTCAAGGAAATCAAAACCTGTCTCTACAAGAAGGGGTCAAGTTTCAGCTCCTCAACTTTTCATGTCTTTTACAAGGGAGAGGACCCTTATTTTTGACACACTTGCATTCAAAATGCAATGTTAAGTCAAGGGGAACAGCAATACTTACTCAAAGAAAGTACAATTTACCTCTCCTGACATAATCTCAGATCCACAGGGGCGTTTTGTTATGGTATCTGGTTCTCTCTTTCACACCTTTTTTGTTTTGCTTGTAaatgtttatgctcccaattgggatgatgtagatttttttttttaacaaacttATTTCTTTGCTGCCCAATCTCAACTCTCAcactatttcatttttggagGTGACTTGAATTGTGTGATCCAATTCAAGGCGTTCAAACCCTAGAGCATTTTCTCCCTCAAAAATGTCCAGCGCTTTGTCTACATTCATGAGACTGGCAGGATGTGTAGATCCATGGAGATTCCTTTTTTCCAATAACAAGGAATTGTCTTTATTTTTATGTAGATAAAGCCCGTCTCCCATCTGTAAAGAAAGTAGAATACTCTGCCGTTGTTGTTAGTGACCATGCTCCTCTGTCACTCGACCTCTCATTCTCATTGAACTATacatatcacccccccccccccccccccccccccatggagaCTCATCTCATCTTTACTTTCAAACAATTCCCTCTGCCCAATTCTATCGAATGCAATTGATGTCTTCATTGAGACAAATAAAACAGATTCGATCTCTGTCTACACTTTGGGAAACACTTAAAAGTGTTTATCCTCTCAGAACAAATGTCCTATTCCTCTCCTCAATAAACCACGGAAAATTAAACAACAGCAGCTGATCGACGCCATTCTGGAATTAGACCAACAATACTCCACATTTCCATCACCAGAACATCATAAAGAAAGGCTGAGTCTTCAAACTCAGTACAATTTACTATCCACTGATAAGGCTGAGGAGCAGCTACTTCACGCACGCAGGTTTTGTTTACCAGCATGGAGAAAGGGCTGGTCGACTTCTAGCTTCTCAACTCGAGTTCAAATCTGCCTCACAGCTGATCCCTCAAATTCCTCAGGTGTTTTATCAGTTAGTCCCACTGAAATCAATAATACTTTCAAAACCATTTTATTCAGACCTTTAAACATCAGAATCACCTGAAGACAATTCAATTATGAATGATTTTCTTGACCATTCGGAAACTCCTACCAGAGGagtacagagaagagaggggaaattGATCAACTTCTTTGCAGTTCGAGGAGATTTTTCATTCAATTACAGCAATGCAAAGTGGGAAATCCCCTGGCCCAGATGGCTACCCAATCAAATTCTACAGGTTTTCTGCCAACCTGGCGCTTCTCCTGCTGGAAATGTTAGAAAACACCCAGGACCATGGTGTTTTACCCCAAACCCTGACAGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548376 lncRNA upstream 104561 35368122 ~ 35368472 (+) True G2228636
TU2548375 lncRNA upstream 105715 35366982 ~ 35367318 (+) True G2228635
TU2548370 lncRNA upstream 111563 35361235 ~ 35361470 (+) True G2228630
TU2548358 lncRNA upstream 121771 35350907 ~ 35351262 (+) True G2228618
TU2548292 lncRNA upstream 132721 35340082 ~ 35340312 (+) True G2228552
TU2548541 lncRNA downstream 48727 35525483 ~ 35525695 (+) True G2228782
TU2548544 lncRNA downstream 54113 35530869 ~ 35531082 (+) True G2228785
TU2548584 lncRNA downstream 129102 35605858 ~ 35606235 (+) True G2228825
TU2548570 lncRNA downstream 141238 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548573 lncRNA downstream 158201 35634957 ~ 35635306 (+) True G2228814
XR_005040941.1 mRNA upstream 282824 35181902 ~ 35190209 (+) False LOC110521757
XR_005040942.1 mRNA upstream 282824 35181902 ~ 35190209 (+) False LOC110521757
XR_005040943.1 mRNA upstream 282824 35181902 ~ 35190209 (+) False LOC110521757
XM_036968940.1 mRNA upstream 356275 34960599 ~ 35116758 (+) True LOC118945793
XR_002473207.2 mRNA upstream 540396 34927630 ~ 34932637 (+) True LOC110521755
XM_021599609.2 mRNA downstream 66751 35543507 ~ 35545435 (+) True psmg4
XM_036968811.1 mRNA downstream 105517 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA downstream 105518 35582274 ~ 35618259 (+) False wu:fi04e12
XM_036969191.1 mRNA downstream 143163 35619919 ~ 35634039 (+) True tbc1d7
XM_036968987.1 mRNA downstream 247140 35723896 ~ 35734960 (+) False LOC110521768
TU2548066 other upstream 282882 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1868139 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4606511 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6451151 29021586 ~ 29021882 (+) True G2220253
TU2539165 other upstream 6923555 28549029 ~ 28549478 (+) True G2219991
TU2548536 other downstream 41478 35518234 ~ 35519242 (+) True G2228777
TU2548634 other downstream 216554 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 324276 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 2108270 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2846604 38323360 ~ 38336981 (+) True G2231371

Expression Profile