RNA id: TU2548544


Basic Information

Item Value
RNA id TU2548544
length 214
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G2228785
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35530869 ~ 35531082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtaaattcactaaTAAAAACACTCATCCATGTTTTCTTTAAGGAATTTGAGCAGTACATTAAGACCTTTCCATTCTTTCAAAAGAAAGCTGATAAAACAATCAATATGTGTGTATCTTTTAAGGTCTTTGTATAACCTGTAATTTGTTGTACAACCTAGCATATGTTATCATTGTCTGTTTGTATACttattgtatgtatgtatactgATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548541 lncRNA upstream 5174 35525483 ~ 35525695 (+) True G2228782
TU2548402 lncRNA upstream 54113 35473033 ~ 35476756 (+) True G2228660
TU2548376 lncRNA upstream 162397 35368122 ~ 35368472 (+) True G2228636
TU2548375 lncRNA upstream 163551 35366982 ~ 35367318 (+) True G2228635
TU2548370 lncRNA upstream 169399 35361235 ~ 35361470 (+) True G2228630
TU2548584 lncRNA downstream 74776 35605858 ~ 35606235 (+) True G2228825
TU2548570 lncRNA downstream 86912 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548573 lncRNA downstream 103875 35634957 ~ 35635306 (+) True G2228814
TU2548571 lncRNA downstream 104481 35635563 ~ 35637191 (+) True G2228812
TU2548592 lncRNA downstream 106941 35638023 ~ 35638479 (+) True G2228833
XM_036969306.1 mRNA upstream 38494 35405569 ~ 35492375 (+) False LOC110521760
XM_021599609.2 mRNA downstream 12425 35543507 ~ 35545435 (+) True psmg4
XM_036968811.1 mRNA downstream 51191 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA downstream 51192 35582274 ~ 35618259 (+) False wu:fi04e12
XM_036969191.1 mRNA downstream 88837 35619919 ~ 35634039 (+) True tbc1d7
XM_036968987.1 mRNA downstream 192814 35723896 ~ 35734960 (+) False LOC110521768
TU2548536 other upstream 11627 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 340718 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 1925975 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4664347 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6508987 29021586 ~ 29021882 (+) True G2220253
TU2548634 other downstream 162228 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 269950 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 2053944 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2792278 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 3259233 38790315 ~ 38790675 (+) True G2232661

Expression Profile