RNA id: TU2548822


Basic Information

Item Value
RNA id TU2548822
length 1780
lncRNA type antisense_over
GC content 0.59
exon number 1
gene id G2229051
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35611012 ~ 35612791 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGACCTGACTCTGGAGTTGCCCTATCTCCATCCTGAGTTTCTCCCTCTCCGAAGAGAGCTCTGCCACCAGGCTCTGGGTATCCAGGCTGCTTCCCGAGCTGCTCTTCAGCTGCAGCTCCAGGACAGTGATCTGGGCCACCAGCTCGTCATCAGCCCCCTGTCTGGTCCTCAGCAGCTCCTCCCTCTCATGTTTCACCCCCCTCAACTCCTCCTCGAGCCGCAGTCGCTCTTTGGTCAGGGTCTGGGTCAGGGTCTGGAGACGCTCGTGTTCTACCGAGCTCTCGTTGAGCACTCGGCTCTTCTCCTCGATGGTCTTGTAGAGTGTTTCGTTACGGAGATTAGCCTCGCGGACCTTGGCCTGCTCCTGGAGGAGATGCTGTTGGAGTGACTTCAGCTCGGAGCTCAGAGACGCCAGACTCTCCGTGGAGGCTTTGAACTCCTTCAACCTCCTCTCTAGCTCCTCCTGGAGTTTCCtgtgctcctcttctctcctcctccccacggTTTTGGCCTCCTCCTGACTGCGACGCAGGATGGTGATGGTGCTGGTGTACTCCCGCATGGTGTGGTTAGTTTTCTGGAGCTCTGTCTCCACGTGCCTCCTCTTGATCACCTCCTCCTGGCTGGTTCTCCTCAAAGCCTCCACCTCCCCATCTTTCCTTTCAAGAGTAGCCTGCAGCTCCTTGATGCATCCCTGTAACCTGGCtacactctgctctgccttgtTCTTCTCACCGCTCACCTTCTTAAACTCTGTACAGATACTAACcagctcctcctccacctccctcagcCGGGTCACACCCTGGGAGGAGGAGGTCTGCTTGCCCTGAATCTCCCCCAGGAGCAGCTCCATCctggtcctctcctcctccaatgctcccctcctcctctgctcctcgtCCAGGCTGTGTGTGAGGAGGACCAGCTGGCCGCTACTGTCCTGCAGGGCCTTGGTGAGCTCTGACACCTCATCTCTATACTGActactgtcctcccctctctgcctGACTAATATCTCCACCTGCGCCTCCAGCTCCCTTCTCCTCCGCGCCTCCTCTGTGACCACAGATCTCTGAGAATGGGCCTCCTCCTCCGCCATCTTCCGCTGCTCCTCGGCCTGACTCAGAGACACATTCAGCCTCTTGAGCTGGTCCTCCTGGTCCCTCCTATCAGCCTCTAGCCGGTCACACTGCAACTTGATGCCCTggtccacctcctccctctgGGAAGACAGGTGCTGGATGTCCGTCCTGCAGATGGTAATCTGGGACTCATAGCTGAGCTTTAGGTTACTGATCTCCACACTGCATTGTCTCCTTACCTTAGACAGCTCTTGCTCCAGCTCTTTGAAGCgctgcccctcctcctccagctgctTCCTTAAccgctctgcctccctctcctggGTCCCCACGCTCTTCTCCACCTCCATCTTTGCCCAGTTGGCCTGCTCCAACTCCTTCTGCCTCCTCCTCAGCACCTGCTCGTGCTCATCCTGCTGCTCCCCGTAGCGCTCATccgccatcctcctcttcctcttctcctcctcgaCGAGGGAGTTGAGGCGGGTCACCTGCTCCTGCAGCTCCTTCAGTTGGCCGCGGGTGGAGGCAAGAGAGTCCTGGGTGGCGCTGCACTGCAGGGCCGTGCTCCTCTTCACCTCCTCCACAGAGAGGAGCTGCTCCTGCGACTGGGACAGCTCCAGCCGGTAGCGGACTAACGCCTCCTCCAGAGAACTGTTCTTAGCGTTGTGGTCCTCAATGTCCTCTTTGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548819 lncRNA downstream 6504 35604252 ~ 35604508 (-) True G2229048
TU2548818 lncRNA downstream 9355 35601396 ~ 35601657 (-) True G2229047
TU2548817 lncRNA downstream 9747 35601053 ~ 35601265 (-) True G2229046
TU2548816 lncRNA downstream 10425 35600199 ~ 35600587 (-) True G2229045
TU2548815 lncRNA downstream 11219 35599495 ~ 35599793 (-) True G2229044
TU2548823 lncRNA upstream 1150 35613941 ~ 35614177 (-) True G2229052
TU2548836 lncRNA upstream 18646 35631437 ~ 35633769 (-) True G2229065
TU2548838 lncRNA upstream 21369 35634160 ~ 35634543 (-) True G2229067
TU2548837 lncRNA upstream 22163 35634954 ~ 35635332 (-) True G2229066
TU2548835 lncRNA upstream 23803 35636594 ~ 35637613 (-) True G2229064
XM_036968865.1 mRNA downstream 33965 35545576 ~ 35577047 (-) False LOC110520993
XM_036968866.1 mRNA downstream 33965 35545576 ~ 35577047 (-) True LOC110520993
XM_021599605.2 mRNA downstream 96620 35499988 ~ 35514392 (-) False LOC110521763
XM_021599613.2 mRNA upstream 29606 35642397 ~ 35656232 (-) False phactr1
XM_021599614.2 mRNA upstream 29606 35642397 ~ 35717855 (-) True phactr1
XM_021599618.2 mRNA upstream 197777 35810568 ~ 35873392 (-) True LOC110521771
XM_036968976.1 mRNA upstream 287684 35900475 ~ 35966931 (-) False LOC110521773
XM_036968974.1 mRNA upstream 287684 35900475 ~ 35966970 (-) False LOC110521773
TU2547499 other downstream 1068393 34542217 ~ 34542619 (-) True G2227801
TU2547162 other downstream 1287357 34311142 ~ 34323655 (-) True G2227478
TU2546396 other downstream 1801118 33809379 ~ 33809894 (-) True G2226745
TU2546202 other downstream 1908569 33699880 ~ 33702443 (-) True LOC110521741
TU2546157 other downstream 1981118 33629122 ~ 33629894 (-) True G2226519
TU2548951 other upstream 186013 35798804 ~ 35799357 (-) True G2229175
TU2549451 other upstream 600355 36213146 ~ 36214385 (-) True G2229647
TU2550007 other upstream 907561 36520352 ~ 36524797 (-) True LOC110521777
TU2551806 other upstream 1888419 37501210 ~ 37523006 (-) False LOC110521791
TU2551810 other upstream 1888620 37501411 ~ 37523006 (-) True LOC110521791

Expression Profile