RNA id: TU2548837


Basic Information

Item Value
RNA id TU2548837
length 379
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2229066
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35634954 ~ 35635332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaccagcttcatgaagtagtcacctggaatgcatttcaattaacaggtgtgccttgcttaaagttcatttgtggaattgatttccttcttaatgcgtttgagccaatcagttctgttgtgacaaggtaggggtggtatacagcagatggtattttaccaaatagggccaagtccatattatagcaagaacagttcaaataagcaaagagaaacgacagtacatcattactttaagacatgaaggtcagtcaatgcagaacatttcaagaactttgaaagtttaaagtgcaatcgcaaaaaccatcaagcgctatgatgaaactggctctcattatgaccgccacaggaagggaagacccagagttacctctgctgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548838 lncRNA downstream 411 35634160 ~ 35634543 (-) True G2229067
TU2548836 lncRNA downstream 1185 35631437 ~ 35633769 (-) True G2229065
TU2548823 lncRNA downstream 20777 35613941 ~ 35614177 (-) True G2229052
TU2548822 lncRNA downstream 22163 35611012 ~ 35612791 (-) True G2229051
TU2548819 lncRNA downstream 30446 35604252 ~ 35604508 (-) True G2229048
TU2548835 lncRNA upstream 1262 35636594 ~ 35637613 (-) True G2229064
TU2548941 lncRNA upstream 144667 35779999 ~ 35780405 (-) True G2229165
TU2548945 lncRNA upstream 151203 35786535 ~ 35786979 (-) True G2229169
TU2548952 lncRNA upstream 164784 35800116 ~ 35800471 (-) True G2229176
TU2548959 lncRNA upstream 170765 35806097 ~ 35806520 (-) False G2229179
XM_036968865.1 mRNA downstream 57907 35545576 ~ 35577047 (-) False LOC110520993
XM_036968866.1 mRNA downstream 57907 35545576 ~ 35577047 (-) True LOC110520993
XM_021599605.2 mRNA downstream 120562 35499988 ~ 35514392 (-) False LOC110521763
XM_021599613.2 mRNA upstream 7065 35642397 ~ 35656232 (-) False phactr1
XM_021599614.2 mRNA upstream 7065 35642397 ~ 35717855 (-) True phactr1
XM_021599618.2 mRNA upstream 175236 35810568 ~ 35873392 (-) True LOC110521771
XM_036968976.1 mRNA upstream 265143 35900475 ~ 35966931 (-) False LOC110521773
XM_036968974.1 mRNA upstream 265143 35900475 ~ 35966970 (-) False LOC110521773
TU2547499 other downstream 1092335 34542217 ~ 34542619 (-) True G2227801
TU2547162 other downstream 1311299 34311142 ~ 34323655 (-) True G2227478
TU2546396 other downstream 1825060 33809379 ~ 33809894 (-) True G2226745
TU2546202 other downstream 1932511 33699880 ~ 33702443 (-) True LOC110521741
TU2546157 other downstream 2005060 33629122 ~ 33629894 (-) True G2226519
TU2548951 other upstream 163472 35798804 ~ 35799357 (-) True G2229175
TU2549451 other upstream 577814 36213146 ~ 36214385 (-) True G2229647
TU2550007 other upstream 885020 36520352 ~ 36524797 (-) True LOC110521777
TU2551806 other upstream 1865878 37501210 ~ 37523006 (-) False LOC110521791
TU2551810 other upstream 1866079 37501411 ~ 37523006 (-) True LOC110521791

Expression Profile