RNA id: TU2548573


Basic Information

Item Value
RNA id TU2548573
length 350
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2228814
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35634957 ~ 35635306 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcagaggtaactctgggtcttcccttcctgtggcggtcataatgagagccagtttcatcatagcgcttgatggtttttgcgattgcactttaaactttcaaagttcttgaaatgttctgcattgactgaccttcatgtcttaaagtaatgatgtactgtcgtttctctttgcttatttgaactgttcttgctataatatggacttggccctatttggtaaaataccatctgctgtataccacccctaccttgtcacaacagaactgattggctcaaacgcattaagaaggaaatcaattccacaaatgaactttaagcaaggcacacctgttaattgaaatgcattcca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548570 lncRNA upstream 16698 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548584 lncRNA upstream 28722 35605858 ~ 35606235 (+) True G2228825
TU2548544 lncRNA upstream 103875 35530869 ~ 35531082 (+) True G2228785
TU2548541 lncRNA upstream 109262 35525483 ~ 35525695 (+) True G2228782
TU2548402 lncRNA upstream 158201 35473033 ~ 35476756 (+) True G2228660
TU2548571 lncRNA downstream 257 35635563 ~ 35637191 (+) True G2228812
TU2548592 lncRNA downstream 2717 35638023 ~ 35638479 (+) True G2228833
TU2548593 lncRNA downstream 6136 35641442 ~ 35643876 (+) True G2228834
TU2548694 lncRNA downstream 144171 35779477 ~ 35779757 (+) True G2228932
TU2548704 lncRNA downstream 163821 35799127 ~ 35799518 (+) True G2228942
XM_036969191.1 mRNA upstream 918 35619919 ~ 35634039 (+) True tbc1d7
XM_036968811.1 mRNA upstream 16698 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA upstream 16698 35582274 ~ 35618259 (+) False wu:fi04e12
XM_021599609.2 mRNA upstream 89522 35543507 ~ 35545435 (+) True psmg4
XM_036969307.1 mRNA upstream 142582 35405569 ~ 35492375 (+) False LOC110521760
XM_036968987.1 mRNA downstream 88590 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA downstream 88728 35724034 ~ 35734960 (+) False LOC110521768
XM_036969076.1 mRNA downstream 165337 35800643 ~ 35805071 (+) False LOC110521770
XM_036969226.1 mRNA downstream 368003 36003309 ~ 36062700 (+) True LOC110520994
XM_036968941.1 mRNA downstream 803306 36438612 ~ 36489124 (+) True LOC110520956
TU2548536 other upstream 115715 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 444806 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2030063 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4768435 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6613075 29021586 ~ 29021882 (+) True G2220253
TU2548634 other downstream 58004 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 165726 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 1949720 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2688054 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 3155009 38790315 ~ 38790675 (+) True G2232661

Expression Profile