RNA id: TU2548593


Basic Information

Item Value
RNA id TU2548593
length 2307
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2228834
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35641442 ~ 35643876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccgtttatacctggtgcttTCATAGGTTGGTTGTCCTGATCTTTtctacattctgattgtgcccacatttccaGAAATGTGTCTACACAGGCTATTAAAATGTCTTATCTGTCCACTGTCTTGGTTGTGACCAGATTTCCTTCCTTTATTCAAATTATTTCACAGttattctttcaaaataatatttatttattgtaaGATATGTTGATGTAATCAGTCAATGGTGCCACCTGGCAATGATTTTAGACGGCAGAAAAACAATGATTTAAATGGTTTCTCTGTCCAGATCTTTCTACACAATGCATGCCTGACTACCTCCGGAAGTGGGAAGAATgatctgatcacaatcagatcacaatgtgtcttttGATTTTCTACACCTGCCTAATAATGTGGGCATAACCAGAATTTGGACAAGATCCGGACAAAGGACCcaagttagaaccaggtataaacagggctatAGAAGATGAACAAATAGTTAACAATCATCACATGCAGTTTCCTTCTGTACAAAaaagaaaaacatatttaaattcATATTTAAATATTTAAGTTTCTTTTGTATTATGTACATATATTATACAAAGAGTGTCCTCTTTTGCTAGTTTGGATACAGGAGAGAGGCACAGGGAAACAACACTGAGTCTTGGGTCGTGTTAATGAAGCACTCCGTTGTAAAACATTTTCCTGttttgtgcctaatgaacacacacacacacacacaccacaagtcAAAGGGTTCAGACTAAAGGATCAAGACCAACTCATCAACTGCATGTGTTcattgtaaaaataataataataataatgtttttccTTGTATTTTGAGGTGTCTGGCTTCTTGTGAGCAAAAGGTGGTACTGTACTTTCATTCACAGCCAAAGGGTGGTCTAATATAGGTTCTCCACTATGAGGCCAAACCAGGTGGAACCATACAATTCCTGTTTTGAGAACATTGAGAAATTGAacaattccattccattcagaACTGATACTTACCAGTCTATGGAGCACGCTACTGAAACATTATATTGACAACATACTTGATCAAATGTCATTCAAACAAAGTACATTTGGCAATGTTTTCATCCCTGTAAACAATACAACAGGCACAGTGACACTatacagagggttgcagaactcTCAACAGTAATAATGATGATCTGGGTTGCATTCAAGATCACAACAGCATTTCAAAGTGTATTTGGTATTGAGCGGGTAGCTCTCTGAAATGTTCCCAGTACTTGTTCACTTGAACGCAgcccagaaagacagacagatggaggaaAGAAAAGTTCAATTATTGCTTGGTTCACATTTCACTATCCCAACATGAACACAACATGGACAGGAGAGTTTTGTGTTGTATTTCAACGTTTTTAGAGGTAAATATTCCGATCATATTCTCCTACTACAGTTTCCTTCAGAATAGCACATACCGTGTACGGTATTGTAAAATAGTACTTTAACCACAACACACTTATTACAGAATCCTATTCTGCAGTACTATCAGATTAAAAGGGTTTGGTCCCTCTGTTTTGGAAACAGCAGCCCACAATGGAAAATAGTCAAACTAATAATGTACCAAAAAGTATTAAAAAGGCAGGAACATTAACCAATGGAGGATAATAATTTTTTAACCAATCAGTTGTTGGATGTCTCTCTGTATTCCTTACAGATACCCTCCCAAACTCAATTTCCCACAATCCCAAAGTCTTGTTGGCACAGATATAGGAATAGAGTTCCATAACCCCTCCGTAGAGTACCGTCAAAAACTAAAGTGCAGTAAAGTAAACACATGAACTATCTTCATAATTAAAAAGGATAATAAAAGGCTGTTAAAAACAATACGTTTTAGTCCATATAATCTCCGTTTAGAGGagaacccagtcagtcagtccatccaGTGCTTTCCATCAATCTCTCTCCATGTGTACGATGCTCCCTCTCCACAACCCCGACGTGGCCACACTGTGACCTCTCTATAAACACAGaaccaagatactgttgtgattGGTCCAGTCTGCCCTCTCTAGATATTGGCACATATTTTGGGTCAACACTGGAGCCTGGAGTAGTGTCAGCTGCCCAGTTCTgtacacacacccctcccaggTTCAGATTACATTTCTGGTCAGTTTCAGTACATGTTCTACTCTGGTTCTAGTGTGGTTCTGGACCAGTTCTGGTCTTGTTGTGTTCTGGTCTGGAAGCGAAGGGGTGTGGTACACAGAGGCAGTAGTTTGCGATCCAGCACTTGAGGTTATTGTAAAAGATGGCAGAAGAAGAACTACGGTCGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548592 lncRNA upstream 2963 35638023 ~ 35638479 (+) True G2228833
TU2548571 lncRNA upstream 4251 35635563 ~ 35637191 (+) True G2228812
TU2548573 lncRNA upstream 6136 35634957 ~ 35635306 (+) True G2228814
TU2548570 lncRNA upstream 23183 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548584 lncRNA upstream 35207 35605858 ~ 35606235 (+) True G2228825
TU2548694 lncRNA downstream 135601 35779477 ~ 35779757 (+) True G2228932
TU2548704 lncRNA downstream 155251 35799127 ~ 35799518 (+) True G2228942
TU2548735 lncRNA downstream 200907 35844783 ~ 35846275 (+) True G2228968
TU2549054 lncRNA downstream 256622 35900498 ~ 35902779 (+) True G2229262
TU2549060 lncRNA downstream 266229 35910105 ~ 35910623 (+) True G2229268
XM_036969191.1 mRNA upstream 7403 35619919 ~ 35634039 (+) True tbc1d7
XM_036968811.1 mRNA upstream 23183 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA upstream 23183 35582274 ~ 35618259 (+) False wu:fi04e12
XM_021599609.2 mRNA upstream 96007 35543507 ~ 35545435 (+) True psmg4
XM_036969310.1 mRNA upstream 149067 35405570 ~ 35492375 (+) True LOC110521760
XM_036968987.1 mRNA downstream 80020 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA downstream 80158 35724034 ~ 35734960 (+) False LOC110521768
XM_036969076.1 mRNA downstream 156767 35800643 ~ 35805071 (+) False LOC110521770
XM_036969226.1 mRNA downstream 359433 36003309 ~ 36062700 (+) True LOC110520994
XM_036968941.1 mRNA downstream 794736 36438612 ~ 36489124 (+) True LOC110520956
TU2548536 other upstream 122200 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 451291 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2036548 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4774920 30863824 ~ 30866522 (+) True LOC110521703
TU2539452 other upstream 6619560 29021586 ~ 29021882 (+) True G2220253
TU2548634 other downstream 49434 35693310 ~ 35735400 (+) True LOC110521768
TU2548707 other downstream 157156 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 1941150 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2679484 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 3146439 38790315 ~ 38790675 (+) True G2232661

Expression Profile