RNA id: TU2548694


Basic Information

Item Value
RNA id TU2548694
length 281
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2228932
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35779477 ~ 35779757 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttccgcactgactgaccttcatgtcttaaagtaatgatggactgtcatttctctttgcttatttgagctgttcttgccataatttggacttggtcttttaccaaatagggctctcttTTGTATAgcacacctaccttgtcacaatacaacggATTTAATCAAATTcatcaagaaggaaagaaattccacaaattaactttcaacaaggcacacctgtcaattgaaatgcattccaggtgactacctcatgaagctggtttgagagaatgccaagagtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548593 lncRNA upstream 135601 35641442 ~ 35643876 (+) True G2228834
TU2548592 lncRNA upstream 140998 35638023 ~ 35638479 (+) True G2228833
TU2548571 lncRNA upstream 142286 35635563 ~ 35637191 (+) True G2228812
TU2548573 lncRNA upstream 144171 35634957 ~ 35635306 (+) True G2228814
TU2548570 lncRNA upstream 161218 35617994 ~ 35618259 (+) True wu:fi04e12
TU2548704 lncRNA downstream 19370 35799127 ~ 35799518 (+) True G2228942
TU2548735 lncRNA downstream 65026 35844783 ~ 35846275 (+) True G2228968
TU2549054 lncRNA downstream 120741 35900498 ~ 35902779 (+) True G2229262
TU2549060 lncRNA downstream 130348 35910105 ~ 35910623 (+) True G2229268
TU2549062 lncRNA downstream 132791 35912548 ~ 35912774 (+) True G2229270
XM_036968987.1 mRNA upstream 44517 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 44517 35724034 ~ 35734960 (+) False LOC110521768
XM_036969191.1 mRNA upstream 145438 35619919 ~ 35634039 (+) True tbc1d7
XM_036968811.1 mRNA upstream 161218 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036968812.1 mRNA upstream 161218 35582274 ~ 35618259 (+) False wu:fi04e12
XM_036969076.1 mRNA downstream 20886 35800643 ~ 35805071 (+) False LOC110521770
XM_036969226.1 mRNA downstream 223552 36003309 ~ 36062700 (+) True LOC110520994
XM_036968941.1 mRNA downstream 658855 36438612 ~ 36489124 (+) True LOC110520956
XM_021599626.2 mRNA downstream 723394 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA downstream 735045 36514802 ~ 36516539 (+) False LOC118945799
TU2548634 other upstream 44077 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 260235 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 589326 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2174583 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4912955 30863824 ~ 30866522 (+) True LOC110521703
TU2548707 other downstream 21275 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 1805269 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2543603 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 3010558 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 3032893 38812650 ~ 38813379 (+) True G2232855

Expression Profile