RNA id: TU2548704


Basic Information

Item Value
RNA id TU2548704
length 392
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2228942
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35799127 ~ 35799518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttgggatgtttaaagcttgggaaatctttttgtatccaaatctggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaatggacctctgagacaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcgtcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548694 lncRNA upstream 19370 35779477 ~ 35779757 (+) True G2228932
TU2548593 lncRNA upstream 155251 35641442 ~ 35643876 (+) True G2228834
TU2548592 lncRNA upstream 160648 35638023 ~ 35638479 (+) True G2228833
TU2548571 lncRNA upstream 161936 35635563 ~ 35637191 (+) True G2228812
TU2548573 lncRNA upstream 163821 35634957 ~ 35635306 (+) True G2228814
TU2548735 lncRNA downstream 45265 35844783 ~ 35846275 (+) True G2228968
TU2549054 lncRNA downstream 100980 35900498 ~ 35902779 (+) True G2229262
TU2549060 lncRNA downstream 110587 35910105 ~ 35910623 (+) True G2229268
TU2549062 lncRNA downstream 113030 35912548 ~ 35912774 (+) True G2229270
TU2549148 lncRNA downstream 171518 35971036 ~ 35971255 (+) True G2229355
XM_036968987.1 mRNA upstream 64167 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 64167 35724034 ~ 35734960 (+) False LOC110521768
XM_036969191.1 mRNA upstream 165088 35619919 ~ 35634039 (+) True tbc1d7
XM_036968811.1 mRNA upstream 180868 35582273 ~ 35618259 (+) False wu:fi04e12
XM_036969076.1 mRNA downstream 1125 35800643 ~ 35805071 (+) False LOC110521770
XM_036969226.1 mRNA downstream 203791 36003309 ~ 36062700 (+) True LOC110520994
XM_036968941.1 mRNA downstream 639094 36438612 ~ 36489124 (+) True LOC110520956
XM_021599626.2 mRNA downstream 703633 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA downstream 715284 36514802 ~ 36516539 (+) False LOC118945799
TU2548634 other upstream 63727 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 279885 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 608976 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2194233 33572140 ~ 33604894 (+) True G2225948
TU2542282 other upstream 4932605 30863824 ~ 30866522 (+) True LOC110521703
TU2548707 other downstream 1514 35801032 ~ 35802968 (+) True LOC110521770
TU2550824 other downstream 1785508 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2523842 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2990797 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 3013132 38812650 ~ 38813379 (+) True G2232855

Expression Profile