RNA id: TU2549054


Basic Information

Item Value
RNA id TU2549054
length 2245
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G2229262
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 35900498 ~ 35902779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATTGATCTGTGCCATCTACTGGAAAAATACTCTAATTGACATTTTCATATGGCTGCGGCCACACAGAGATGCATGAGCGCAGATGAAACCTTATATGCATTCATCAGTTTTCTGTTTTTGTCCATCAAAAGTTTAACTCAATGAAACTATCTTAGGACAAGTTGCATGTGTAAAAAGACAAGACGACTTGTGCAGTTTTTGTCTGACAATAATCAACGGAAAATGCAAAAGCATTTGCTCAATCCGGAAGTTTTGGACACAACATATCTATGTGGCTGTAGCCTAAATGACAAAAGTAGGAATGTAATATATGAGTTATAGTTCTATTTTCCATATGTGAGTGAAGTAACATGAATTTACAAATTCTTAAAatagagcagtggaggctgctgaggggaggacagccttgcggtaatggctggaatgaagtAAACAGAATGGCGTcagacacatggaaaccatgtgttggatgtgtttgatacaattccactccagccattaccagtaGCCCGTCGTCCCCAATtaaaaggtgccaccaacctcatgTGCAATAGAGTACTCAAGTTATGCTCTTGGGCCAGAGAACTCAGGAAAACACAGAGGTAGGAGACACGGATCACAGAAACATGTGAGTATGGAAAACAGTTCCCTGAGCCCATCGACTCTCCAACAATACGACAAGGAAGAGACTTCGGTGTACATCCCAAATGGGAGCTTAtttccaatatagtgcactacgtttgaccagaggtACACTACTGTTCCTCACACAGTTACCAGTGCTACACCATGTCATTGTCAAGAACAAGACAGTAATCATAGTACCCCTTACAACAATATGTTGCACTGTTTCATATCTCCTCAGAGTTATTCATCTTTCAAACATAATGCATCATGTTAAATATACAGACAATTATGTGTTCAAAGACATAAGTATTTATAAAAACGATGCACATCAATTATAAATATTTCAGCCAATGTATAAAACCCACATCTTTTAAAATCTGTTAATATCTGTTGAAAGGGACACCAGATATAGGCTTTTGTCTAATATAACAAACGTGGGCTGTACGCAGAAGATGCCTGCTGGGTGTCGACGAACGGAGACGATTCAACATGTAGTATTGTCAGGAGATGAATAAAAAATAGCAGACGATACTCTGTTGTCATATGCAATAGAACGGTCACTCGCTAATTTTAACCGATCAGCGTGGTCTGATTTGTCTAAGACATCAGTGCTCTAGCTTTAATCTTAAACTCTATGATATGGTGCTACTCCATGGTGGGGCTTAACTATTAAGTTGATGCTAAACAAACCCAGTCGATTGTAGCAGTGCTTGACTGAAATCCTTTTGGGTGTAGGTACAGTTTATATTGGTGTGTTCCGGCCCAAGTCAAGCACGGGATTGTAGAGTATCCTATGTTTCACTGATGATATGAGTTCAAAAGGATTCGCTGAAGTGATTGAAAGTGACCCTATTCATTGTTGAAAGCCTTTTACTCGGCATGGCATGTAAAGCCAGACTAGTAATGCTGTGTGATTATAGGGTAATATCATATAGATTACAGTTAAACAAATAAAGTTGTTGGAAAAAATGTCCTAAAAATACTAACATACATGACAGATTCCCTCCCTTTACAATGACATCCAGATCATATACATAAAtatcagtggtgtttgataccgtacATTCCAGCCATCACAATGGTCTCTGCCCATCAGCCTCATCTGATAAGCAGACTTCGTTAATATAAGCATTGGTTTTCTTGAGAAGATTAAGTCCTCGTGCACTTCAGGGTCAAGTTTCCTCTAGGAACAGATCTATGATCAGTTCAGATTTCCCCTCACCTAATCTTAACCATAAATGGGGGAAATGCAAAATCTGACCAGCGTCAAGGTGAAATGTCACCCTACAACCCTGGTGGCAGGGTAAAGATGTTGCTACTGTGCTCCCCTCTGCTGGTAGTTTGCCATAATGCAACACATTAGTCTTCTCTACATCGGCATTTAAGTGCAGTATGTACCAGCAGGACTAACTGTATGTctgtggtgtgtgagtgtgtgtgtgtgtgtgtgtgtggtgtgtgagtgtgtgtctgtgtgtgtgtccaagtcTTATTTCTTCAGTGATCCAATCATCACCTTGGAGACGAAGTTGACGATGGCACTGGCAGGTTGTTCGGGGTCGTGTTCAGCAAACAGGTGACACACATTCTCCGTCCCACTCATCGACTTCCTCGCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2548735 lncRNA upstream 54223 35844783 ~ 35846275 (+) True G2228968
TU2548704 lncRNA upstream 100980 35799127 ~ 35799518 (+) True G2228942
TU2548694 lncRNA upstream 120741 35779477 ~ 35779757 (+) True G2228932
TU2548593 lncRNA upstream 256622 35641442 ~ 35643876 (+) True G2228834
TU2548592 lncRNA upstream 262019 35638023 ~ 35638479 (+) True G2228833
TU2549060 lncRNA downstream 7326 35910105 ~ 35910623 (+) True G2229268
TU2549062 lncRNA downstream 9769 35912548 ~ 35912774 (+) True G2229270
TU2549148 lncRNA downstream 68257 35971036 ~ 35971255 (+) True G2229355
TU2549174 lncRNA downstream 85959 35988738 ~ 35988977 (+) True G2229381
TU2549191 lncRNA downstream 161451 36064230 ~ 36067189 (+) True G2229398
XM_036969076.1 mRNA upstream 95427 35800643 ~ 35805071 (+) False LOC110521770
XM_036968987.1 mRNA upstream 165538 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 165538 35724034 ~ 35734960 (+) False LOC110521768
XM_036969191.1 mRNA upstream 266459 35619919 ~ 35634039 (+) True tbc1d7
XM_036968812.1 mRNA upstream 282239 35582274 ~ 35618259 (+) False wu:fi04e12
XM_036969226.1 mRNA downstream 100530 36003309 ~ 36062700 (+) True LOC110520994
XM_036968941.1 mRNA downstream 535833 36438612 ~ 36489124 (+) True LOC110520956
XM_021599626.2 mRNA downstream 600372 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA downstream 612023 36514802 ~ 36516539 (+) False LOC118945799
XM_036969041.1 mRNA downstream 612023 36514802 ~ 36516539 (+) True LOC118945799
TU2548707 other upstream 97530 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 165098 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 381256 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 710347 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2295604 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 1682247 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2420581 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2887536 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2909871 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 3271867 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile