RNA id: TU2549363


Basic Information

Item Value
RNA id TU2549363
length 423
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G2229561
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36155686 ~ 36156108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttgctcaccgttcttgtgatcattttgatcccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattccgtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatactttttttccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549191 lncRNA upstream 88497 36064230 ~ 36067189 (+) True G2229398
TU2549174 lncRNA upstream 166709 35988738 ~ 35988977 (+) True G2229381
TU2549148 lncRNA upstream 184431 35971036 ~ 35971255 (+) True G2229355
TU2549062 lncRNA upstream 242912 35912548 ~ 35912774 (+) True G2229270
TU2549060 lncRNA upstream 245063 35910105 ~ 35910623 (+) True G2229268
TU2549366 lncRNA downstream 2534 36158642 ~ 36158907 (+) True G2229564
TU2549798 lncRNA downstream 364239 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA downstream 364239 36520347 ~ 36523684 (+) True G2229959
TU2549885 lncRNA downstream 470907 36627015 ~ 36627235 (+) True G2230040
TU2549865 lncRNA downstream 488482 36644590 ~ 36647937 (+) True G2230020
XM_036969226.1 mRNA upstream 92986 36003309 ~ 36062700 (+) True LOC110520994
XM_036969076.1 mRNA upstream 350615 35800643 ~ 35805071 (+) False LOC110521770
XM_036968987.1 mRNA upstream 420726 35723896 ~ 35734960 (+) False LOC110521768
XM_036968986.1 mRNA upstream 420726 35724034 ~ 35734960 (+) False LOC110521768
XM_036969191.1 mRNA upstream 521647 35619919 ~ 35634039 (+) True tbc1d7
XM_036968941.1 mRNA downstream 282504 36438612 ~ 36489124 (+) True LOC110520956
XM_021599626.2 mRNA downstream 347043 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA downstream 358694 36514802 ~ 36516539 (+) False LOC118945799
XM_036969041.1 mRNA downstream 358694 36514802 ~ 36516539 (+) True LOC118945799
XM_036968902.1 mRNA downstream 520049 36676157 ~ 36685931 (+) False LOC110521781
TU2548707 other upstream 352718 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 420286 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 636444 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 965535 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 2550792 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 1428918 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 2167252 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2634207 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2656542 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 3018538 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile