RNA id: TU2549865


Basic Information

Item Value
RNA id TU2549865
length 3106
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id G2230020
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36644590 ~ 36647937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCTTGATACACAACCTGTTTGATAATACATGTACATTATAATACAGTTATGAATGCTCTTGTATTCATGTAGTCATATCCAGGTGTGTCAACCAGAAAATCTATCCCTACTTTTTACTGTTTAATAACTTCAACTTTCAGGTAAACCAGTAAAGTCATGGTCATCACAACTTGATAGGTAACCTGGTTTTCTGTTTTACTTGTTGGTCTGGTAACAGTTTTGGTTATAGTCATACTATTTATTCCTCTCTCATCACAGGTCTCTTCCATGCTAGAGCCATGTACAACAATGCCTGAGCTATGTGTCAAAGGCCTCATTCTTCACATACTgtatagcagtggtgtaaagtactcaagtaaagatactttaaagtactacttaagtcggtttttgaggtatctgtacttcactatttatatttttgacaacttttacttcactacattcctaaagaaaataatgtaatttttactccatacCATACCTGACACCCagaagtactcattacatttgaaatgcttagcaggacagaaaaatggtccaattcacacagttATCAAgatctgcctCTGATCATGGAACAAATACAGtacaatagctagctagctcttgCAAGCAAGTAGCACATATGGTATCATGTCATTGAGTTAAATGAGCAGACATTTACAGCAGATTTCATCACCAACATTGAAGCTAAATGTATGCAATAATACACAAAGCAACATTTGATTGACATAAATACAGACAATCCACAGCCTTTCGGACTATAATATATTTGAGCAAGGGAATTAATTTGTTACTGAACGTCTGCAAGATGGCTGCCTATGATAGATACTACTTGACTGACTTTTTGAAGGCCTTTAAAATTAAAATTAGGCCATTTCCTCCACACTTAAGTGAGGCATCGTATTACTAGTGTTTAGGGTTATATTCAtagtcttctctttctcttcaaAGGCAAAATCTCAAGTTCCTGTGCTGTGTGAATTAATAAGTTCACTTTCTCTAGTTCTACATCTCACAAATTAGATAGCTAACTCATGGAGTGAACACAGTACTTTAGAAACCATTTCTCATTTCAATGATCAATCAATTTGAAGCTAATAATAAAAGTATTGATGATGCACTGATGGACAACATTGTGACATGCCCATCATTGGCCCTagaaattagaagaaaaaaaaactacagTATACACTTTGCATACAGGTATCAAATATGTTGAGGTAGGAAACATCACAGCAGTCAGGACTTTTTAAAAATATCTATGTCTGAAAGCAAAACAATCTATTGTAACCGTAGACTACCCATTGCAATACAGTACAACCTTTAGTATAACACTATTAGCACAATTCAGTGAGTGAATGTTAACAAGACCATAACCTCACTTTTTATATCAGTCTGGGAATATTGCAGTATATTTTGATTGACTTGAACACATCACTGATAAATGAAACAATATATGGTGGGCAATTTGATGTGGAATTAAAGTATATGAATGGCCCGAGAGAGAGCCTACTCCTAAAGGAAAATGTTTTGGTGGTGCAAAATAGtagaaaaaaaacaaagcagtTGTACGTTGATGAAATACACTGTTAATTAGTTCTAAAAGAGCAATTATATAGAATGTTTGTTGAGTCAATTGTTACTAATGTGGACAATCACCATCTTTTTTAAAGTGCAAATTTACCTCAAATCCTGCAGCTTAAAACACCACTATCAAATGAACCCTTTCAATGATAGAATATTATGTAAAGAATATGTACTTCACTGATGTTCAGACAGAGGCATTCTAGTGATCTCATCATTCAAgagctttaaaataaaaaaatgttacaAGTAGGAACCCTGAAATAATTATATTGTCATGGGGGCATTACAAACTACAGCGTAACGGTTTCAGAGGGGCCATGTGACCAAGTACAGAACGCGGTTTATTTATTTGGTGGGGTTGTCAGCCACCATACACAAAACCGGTCGAGGTAAAGATTAATTTGTCTTTTTCAATCTCAGTTACGTTCTGAAATGTAGGTTGTTTGTTCCAAGATGCATGGTAACAAGCAAATACTGTGAAAACACTGAAAAATGATTGAAAAAGTACAACATCAGGAGGGTAAATAATACTACACTATGTACAAACTAAGAACACTGCTTTGATTTGTGAAGTCAAGTAGTtccgttttttttcttctttcagaTGGAGAAAACATTAAGTTGCTTTGACCCATTGAATTGGTGAGCAAAGGCAGATAATCTGTGTAGGGCCTGAACATTTCCCCTTTCACTCGCTCAAGAGTAGGCTTGTAACACTGAGGCAAAGGATAAAGGGGGATAACAGAGTAAAGGAATGTGAGAAGTGGTATCCTATACCATGTCAAACATGATTAGTGCTCTAAGGTACATACATGTACGTCAGTTAATCAAATAATTGCTAAATCAGAATCTACAGAGGTGAATTGCATTCAGTTTTGCATCTCGGTTCTTGGATAGTTTCCAAGATCATGTAGTGTGTGTCTTGGAGTTCCCTCTGTAACAAATAAAATCTGTCACACGTCCTTCCTTCCATTCCAAACCAACAGTACAGAAAGACAGACAACATGACCAATCAAAATGCACTGACCACTGAACACACAGCAAGGTCTCAAGCTCAACCCAACTTCCTCCTCATTTATTAACATCTGCAAGCTCAAAAAGGGGCCAGAatatcaaataaaaatacataaataaaataactgCTTCACCTTTGAACTGAAACAGTTCCTTCCTCCCTTACAAAACATTTCATCATCCAGTCAAAAAAAAAACTAATCAAATGAAGGCCTTGCATATTCTTGCtagagagtttttttttttaagttgttttttttttatatatattttttttaaatacagtgtaGCAGACAGGTGGTAGGTATGTACAGATGAGCCCTCTTCCATCGATCCCTAGCTCCCTGGTGTTCAGAGAGGGCCGGTGCGGTTAGTGGGGCCGACTGCTAGACTCTGACACCTGCCGTTTCCGGGGAGTTCCGTAACCGTTAAGGCTGCCGTTAAGGCGTTTGGTCAGACCACCGTTCAGAATGTCCTGGATGTGCTGAACTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549885 lncRNA upstream 17355 36627015 ~ 36627235 (+) True G2230040
TU2549798 lncRNA upstream 120906 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA upstream 120906 36520347 ~ 36523684 (+) True G2229959
TU2549366 lncRNA upstream 485683 36158642 ~ 36158907 (+) True G2229564
TU2549363 lncRNA upstream 488482 36155686 ~ 36156108 (+) True G2229561
TU2550154 lncRNA downstream 99487 36747424 ~ 36747831 (+) True G2230283
TU2550169 lncRNA downstream 115188 36763125 ~ 36766969 (+) True LOC110520996
TU2550230 lncRNA downstream 156091 36804028 ~ 36804227 (+) True G2230359
TU2550248 lncRNA downstream 168199 36816136 ~ 36816547 (+) True G2230377
TU2550250 lncRNA downstream 168679 36816616 ~ 36816816 (+) True G2230379
XM_021599626.2 mRNA upstream 127357 36503151 ~ 36517233 (+) True LOC110521776
XM_036969040.1 mRNA upstream 128051 36514802 ~ 36516539 (+) False LOC118945799
XM_036969041.1 mRNA upstream 128051 36514802 ~ 36516539 (+) True LOC118945799
XM_036968941.1 mRNA upstream 155466 36438612 ~ 36489124 (+) True LOC110520956
XM_036969226.1 mRNA upstream 581890 36003309 ~ 36062700 (+) True LOC110520994
XM_036968902.1 mRNA downstream 28220 36676157 ~ 36685931 (+) False LOC110521781
XM_021599636.2 mRNA downstream 28453 36676390 ~ 36685931 (+) True LOC110521781
XR_005040896.1 mRNA downstream 43479 36691416 ~ 36705488 (+) False LOC110521782
XM_021599639.2 mRNA downstream 43479 36691416 ~ 36705489 (+) False LOC110521782
XM_021599641.2 mRNA downstream 43480 36691417 ~ 36705489 (+) False LOC110521782
TU2548707 other upstream 841622 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 909190 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 1125348 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 1454439 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 3039696 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 937089 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 1675423 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2142378 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2164713 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 2526709 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile