RNA id: TU2550154


Basic Information

Item Value
RNA id TU2550154
length 408
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G2230283
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 36747424 ~ 36747831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCACCCCTCCCTATACCTGATTaaccacaactttgtaagatacagcaagtcacaccatgtgctcaatattgtcacatacaaacacaaggacaaagcatctgctgggctgttatctacagttttgcaacatgcaggtcacaccatgttactcagttcttgtcacacacacaaacaggcaagtaGATGTAGCAAGCAGTTGTTTAATCTCAAGGATATGCTCAAGTGCACAAATGCAGATACTTCACACAGCCAACATCAgataatatttaatcatatatacagtgccttgcgaaagtattcggcccccttgaacttggcgaccttttgccacatttcaggcttcaaacataaagatataaaacttttttgtgaagaatcaacaacaagtgggacacaatcatgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2549865 lncRNA upstream 99487 36644590 ~ 36647937 (+) True G2230020
TU2549885 lncRNA upstream 120189 36627015 ~ 36627235 (+) True G2230040
TU2549798 lncRNA upstream 223740 36520347 ~ 36523684 (+) False G2229959
TU2549802 lncRNA upstream 223740 36520347 ~ 36523684 (+) True G2229959
TU2549366 lncRNA upstream 588517 36158642 ~ 36158907 (+) True G2229564
TU2550169 lncRNA downstream 15294 36763125 ~ 36766969 (+) True LOC110520996
TU2550230 lncRNA downstream 56197 36804028 ~ 36804227 (+) True G2230359
TU2550248 lncRNA downstream 68305 36816136 ~ 36816547 (+) True G2230377
TU2550250 lncRNA downstream 68785 36816616 ~ 36816816 (+) True G2230379
TU2550265 lncRNA downstream 81402 36829233 ~ 36829473 (+) True G2230394
XR_005040945.1 mRNA upstream 6868 36735925 ~ 36740556 (+) False LOC118945805
XR_005040946.1 mRNA upstream 6868 36735925 ~ 36740556 (+) False LOC118945805
XR_005040947.1 mRNA upstream 6868 36735925 ~ 36740556 (+) True LOC118945805
XM_021599639.2 mRNA upstream 41935 36691416 ~ 36705489 (+) False LOC110521782
XM_021599641.2 mRNA upstream 41935 36691417 ~ 36705489 (+) False LOC110521782
LOC110520996 mRNA downstream 13111 36760942 ~ 36767311 (+) False LOC110520996
XM_021599647.2 mRNA downstream 20428 36768259 ~ 36791935 (+) True LOC110521785
XM_021599654.2 mRNA downstream 315062 37062893 ~ 37065854 (+) True LOC110521788
XM_021599659.2 mRNA downstream 837158 37584989 ~ 37587001 (+) False insl5a
XR_005040901.1 mRNA downstream 1290536 38038367 ~ 38056640 (+) True LOC118945789
TU2548707 other upstream 944456 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 1012024 35693310 ~ 35735400 (+) True LOC110521768
TU2548536 other upstream 1228182 35518234 ~ 35519242 (+) True G2228777
TU2548066 other upstream 1557273 35181969 ~ 35190151 (+) False LOC110521757
TU2545552 other upstream 3142530 33572140 ~ 33604894 (+) True G2225948
TU2550824 other downstream 837195 37585026 ~ 37587002 (+) True insl5a
TU2551325 other downstream 1575529 38323360 ~ 38336981 (+) True G2231371
TU2552745 other downstream 2042484 38790315 ~ 38790675 (+) True G2232661
TU2552955 other downstream 2064819 38812650 ~ 38813379 (+) True G2232855
TU2553172 other downstream 2426815 39174646 ~ 39176693 (+) True LOC110521001

Expression Profile