RNA id: TU2552955


Basic Information

Item Value
RNA id TU2552955
length 730
RNA type TUCP
GC content 0.59
exon number 1
gene id G2232855
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 38812650 ~ 38813379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgggctcacgtcctaccctcctcgggtcaccctggggtgacgaggacagtggggagccttcaggggaggtattggtggcctacgttggctaaggacgttaagggttatgtctcctcctgttcagtgtgcgctcagagtaaggctcctaggcaccttcctagagggaagctacaacccctccctgttccacagcggccatggtcacatctgtccatagatttcctaaccgatctcccgccgtctcaggggaacaccacggttctggtaattgtggatcggttctctaagtcctgccgtctcctcccgttgcccggtatccctacagccctacagactgcggaggcgttattcacccatgtcttccggcactacggggtgccggaggacatcgtttctgatcggggcccccaattcacgtcccgggtatggagagcgttcatggaacgtttgggggtctctgtcagcctgacctccggttatcaccccgagagtaatgggcaggtggagagagtgaaccaggaggtgggtaggtttctgcggtcgtattgccaggatcggccaggggagtgggcacgatacattccctgggctgaaatggctcagaactcactacgccactcctctactaacgtgtccccttttcagtgtgtgttggggtaccagccggtcctggcaccatggcatccgagccagaccgaggctcctgcggtggaggaatgggtacagcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2552744 lncRNA upstream 22872 38789534 ~ 38789778 (+) True G2232660
TU2552739 lncRNA upstream 31826 38780581 ~ 38780824 (+) True G2232655
TU2552732 lncRNA upstream 41093 38771334 ~ 38771557 (+) True G2232648
TU2552661 lncRNA upstream 62194 38747444 ~ 38750456 (+) True G2232583
TU2552667 lncRNA upstream 66116 38746025 ~ 38746534 (+) True G2232586
TU2552957 lncRNA downstream 1327 38814706 ~ 38878511 (+) True G2232856
TU2552962 lncRNA downstream 8149 38821528 ~ 38822463 (+) True G2232859
TU2552980 lncRNA downstream 27208 38840587 ~ 38844285 (+) True G2232873
TU2553140 lncRNA downstream 304161 39117540 ~ 39119543 (+) False LOC110521001
TU2553144 lncRNA downstream 304161 39117540 ~ 39119566 (+) False LOC110521001
XM_036968783.1 mRNA upstream 527553 38230452 ~ 38285097 (+) True LOC110521800
LOC118945881 mRNA upstream 551265 38261239 ~ 38261385 (+) True LOC118945881
XR_002473216.2 mRNA upstream 587847 38223112 ~ 38224803 (+) False LOC110521799
XR_005040901.1 mRNA upstream 756010 38038367 ~ 38056640 (+) True LOC118945789
XM_021599659.2 mRNA upstream 1225649 37584989 ~ 37587001 (+) False insl5a
XR_002473217.2 mRNA downstream 20405 38833784 ~ 38838725 (+) False LOC110521807
XR_005040978.1 mRNA downstream 23159 38836538 ~ 38838725 (+) True LOC110521807
XM_036969149.1 mRNA downstream 304105 39117484 ~ 39163005 (+) False LOC110521001
XM_036969148.1 mRNA downstream 304105 39117484 ~ 39185276 (+) False LOC110521001
XR_005040937.1 mRNA downstream 304105 39117484 ~ 39191860 (+) False LOC110521001
TU2552745 other upstream 21975 38790315 ~ 38790675 (+) True G2232661
TU2551325 other upstream 475669 38323360 ~ 38336981 (+) True G2231371
TU2550824 other upstream 1225648 37585026 ~ 37587002 (+) True insl5a
TU2548707 other upstream 3009682 35801032 ~ 35802968 (+) True LOC110521770
TU2548634 other upstream 3077250 35693310 ~ 35735400 (+) True LOC110521768
TU2553172 other downstream 361267 39174646 ~ 39176693 (+) True LOC110521001
TU2554140 other downstream 986894 39800273 ~ 39808050 (+) False LOC110521817
TU2554595 other downstream 1330242 40143621 ~ 40144782 (+) True pik3r3b
TU2555824 other downstream 2289059 41102438 ~ 41121090 (+) False LOC110521828
TU2556385 other downstream 2572281 41385660 ~ 41385993 (+) True G2236045

Expression Profile