RNA id: TU2554669


Basic Information

Item Value
RNA id TU2554669
length 553
lncRNA type intronic
GC content 0.42
exon number 1
gene id G2234414
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 40251592 ~ 40252144 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctagggggggtctagaacaggtttctaaagtttcggaactctaggtccgacggttcttttttagctccaacaaagctaactattggagccactgtctgtctctacgcaccccaatacgtccctccatccaagttgtattttagtgcaatttttttttcctttgattttttttgggaaaaatgactgatttactgttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcactatgtctatcaaactgcatgcattgtatgggtaaacacttttaggggcattttaaccacttccggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2554668 lncRNA upstream 4005 40246968 ~ 40247587 (+) True G2234413
TU2554667 lncRNA upstream 9464 40241511 ~ 40242128 (+) True G2234412
TU2554666 lncRNA upstream 12676 40238630 ~ 40238916 (+) True G2234411
TU2554662 lncRNA upstream 23883 40227425 ~ 40227709 (+) True G2234407
TU2554660 lncRNA upstream 28046 40223185 ~ 40223546 (+) True G2234405
TU2554678 lncRNA downstream 11866 40264010 ~ 40264293 (+) True G2234423
TU2554681 lncRNA downstream 18456 40270600 ~ 40270947 (+) True G2234426
TU2554689 lncRNA downstream 33625 40285769 ~ 40286212 (+) True G2234434
TU2554594 lncRNA downstream 43687 40295831 ~ 40297257 (+) True G2234341
TU2555792 lncRNA downstream 801577 41053721 ~ 41054006 (+) True G2235502
XR_005040910.1 mRNA upstream 291496 39959297 ~ 39960096 (+) True LOC118945792
XM_021599715.2 mRNA upstream 293675 39931006 ~ 39957917 (+) True LOC110521823
XM_021599714.2 mRNA upstream 327091 39920864 ~ 39924501 (+) True LOC110521822
XM_036969223.1 mRNA upstream 333098 39911519 ~ 39918494 (+) False LOC110521821
XM_021599719.2 mRNA downstream 175858 40428002 ~ 40468579 (+) False pik3r3b
XM_036969313.1 mRNA downstream 187764 40439908 ~ 40468579 (+) False pik3r3b
XM_021599717.2 mRNA downstream 188351 40440495 ~ 40468579 (+) False pik3r3b
XM_036968942.1 mRNA downstream 848873 41101017 ~ 41158001 (+) False LOC110521828
NM_001124667.2 mRNA downstream 1206737 41458881 ~ 41467520 (+) True LOC110521832
TU2554595 other upstream 106810 40143621 ~ 40144782 (+) True pik3r3b
TU2554140 other upstream 443542 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 1074899 39174646 ~ 39176693 (+) True LOC110521001
TU2552955 other upstream 1438213 38812650 ~ 38813379 (+) True G2232855
TU2552745 other upstream 1460917 38790315 ~ 38790675 (+) True G2232661
TU2555824 other downstream 850294 41102438 ~ 41121090 (+) False LOC110521828
TU2556385 other downstream 1133516 41385660 ~ 41385993 (+) True G2236045
TU2557666 other downstream 2298176 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 2477708 42729852 ~ 42730451 (+) True G2237341
TU2559176 other downstream 3188709 43440853 ~ 43465829 (+) True G2238623

Expression Profile