RNA id: TU2554689


Basic Information

Item Value
RNA id TU2554689
length 444
lncRNA type intronic
GC content 0.47
exon number 1
gene id G2234434
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 40285769 ~ 40286212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagaccggctaggccactccaggaccttgaaatgcttcttacgaacccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatgcatggccccattcattctttcctttacacggatcagtcttcctggtccctttgcagaaaaacagccccaaagcatgatgtttccacgaccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgacgagttgagtttttaccaaaaagttatattttggtttcatctgaccatatgacattctccca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2554681 lncRNA upstream 14822 40270600 ~ 40270947 (+) True G2234426
TU2554678 lncRNA upstream 21476 40264010 ~ 40264293 (+) True G2234423
TU2554669 lncRNA upstream 33625 40251592 ~ 40252144 (+) True G2234414
TU2554668 lncRNA upstream 38182 40246968 ~ 40247587 (+) True G2234413
TU2554667 lncRNA upstream 43641 40241511 ~ 40242128 (+) True G2234412
TU2554594 lncRNA downstream 9619 40295831 ~ 40297257 (+) True G2234341
TU2555792 lncRNA downstream 767509 41053721 ~ 41054006 (+) True G2235502
TU2555799 lncRNA downstream 781330 41067542 ~ 41067796 (+) True G2235509
TU2555800 lncRNA downstream 785740 41071952 ~ 41072288 (+) True G2235510
TU2555815 lncRNA downstream 801852 41088064 ~ 41088278 (+) True G2235525
XR_005040910.1 mRNA upstream 325673 39959297 ~ 39960096 (+) True LOC118945792
XM_021599715.2 mRNA upstream 327852 39931006 ~ 39957917 (+) True LOC110521823
XM_021599714.2 mRNA upstream 361268 39920864 ~ 39924501 (+) True LOC110521822
XM_036969223.1 mRNA upstream 367275 39911519 ~ 39918494 (+) False LOC110521821
XM_021599719.2 mRNA downstream 141790 40428002 ~ 40468579 (+) False pik3r3b
XM_036969313.1 mRNA downstream 153696 40439908 ~ 40468579 (+) False pik3r3b
XM_021599717.2 mRNA downstream 154283 40440495 ~ 40468579 (+) False pik3r3b
XM_036968942.1 mRNA downstream 814805 41101017 ~ 41158001 (+) False LOC110521828
NM_001124667.2 mRNA downstream 1172669 41458881 ~ 41467520 (+) True LOC110521832
TU2554595 other upstream 140987 40143621 ~ 40144782 (+) True pik3r3b
TU2554140 other upstream 477719 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 1109076 39174646 ~ 39176693 (+) True LOC110521001
TU2552955 other upstream 1472390 38812650 ~ 38813379 (+) True G2232855
TU2552745 other upstream 1495094 38790315 ~ 38790675 (+) True G2232661
TU2555824 other downstream 816226 41102438 ~ 41121090 (+) False LOC110521828
TU2556385 other downstream 1099448 41385660 ~ 41385993 (+) True G2236045
TU2557666 other downstream 2264108 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 2443640 42729852 ~ 42730451 (+) True G2237341
TU2559176 other downstream 3154641 43440853 ~ 43465829 (+) True G2238623

Expression Profile