RNA id: TU2556400



Basic Information


Item Value
RNA id TU2556400
length 477
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G2236056
representative True

Chromosome Information


Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 41422760 ~ 41423594 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cacacagacacacacacacacgctcactgaCCTGCGAACATGAGCTCGGACACGTCTGGTTTGACGTGCAGACAGGTGAACAGAGGGAGAGGACACTGGCCCTCGTTCACCTTCTCCTGCAACTCACTCAGCTTTGTGTCCATCCTAGCAGGGATGAGTGTCTCTCCGATGAGCATGCCGAAGATGTCAGTGAAGGTGACGGGCTGTCCGTTGGCCTTCTTGCTCCACAGAGACTGGATGTAGTTGGTGATGTGCTGGGGCAATAGCAGTCTCAGAGGGTTACTGCTCACTCTTTTCATCAGCTCCGCGTTGATCTCCTTAGGACCCTTAGAGGGGAACTCTGGGTGAGAGAACAGGGTCGACATGTACCAGGTGGATCCAGAGAGGCCAGCAATGTAGGTGGCACAGTCCAGGACCCCAGACTCATACAGGCCCTTCATAACCCCAGAGAAGCCCACCATGGCCCTGAAGCCTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2556286 lncRNA upstream 114387 41308102 ~ 41308373 (+) True G2235948
TU2556274 lncRNA upstream 121468 41300954 ~ 41301292 (+) True G2235936
TU2555889 lncRNA upstream 141419 41267894 ~ 41281341 (+) True G2235584
TU2555883 lncRNA upstream 153992 41267894 ~ 41268768 (+) False G2235584
TU2555822 lncRNA upstream 264759 41155447 ~ 41158001 (+) True LOC110521828
TU2556534 lncRNA downstream 71923 41495517 ~ 41495787 (+) True G2236181
TU2556579 lncRNA downstream 128917 41552511 ~ 41553042 (+) True G2236226
TU2556580 lncRNA downstream 129491 41553085 ~ 41554453 (+) True G2236227
TU2556581 lncRNA downstream 130869 41554463 ~ 41554733 (+) True G2236228
TU2556585 lncRNA downstream 136761 41560355 ~ 41560600 (+) True G2236232
XM_036968942.1 mRNA upstream 264759 41101017 ~ 41158001 (+) False LOC110521828
XM_021599716.2 mRNA upstream 954181 40143590 ~ 40468579 (+) False pik3r3b
NM_001124667.2 mRNA downstream 35287 41458881 ~ 41467520 (+) True LOC110521832
XM_021598409.2 mRNA downstream 53891 41477485 ~ 41478421 (+) True LOC110520957
LOC110521005 mRNA downstream 588981 42012575 ~ 42053669 (+) True LOC110521005
XM_036969301.1 mRNA downstream 902665 42326259 ~ 42501262 (+) False LOC110521838
XM_036969300.1 mRNA downstream 902665 42326259 ~ 42501263 (+) False LOC110521838
TU2556385 other upstream 36767 41385660 ~ 41385993 (+) True G2236045
TU2555824 other upstream 301670 41102438 ~ 41121090 (+) False LOC110521828
TU2554595 other upstream 1277978 40143621 ~ 40144782 (+) True pik3r3b
TU2554140 other upstream 1614710 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 2246067 39174646 ~ 39176693 (+) True LOC110521001
TU2557666 other downstream 1126726 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 1306258 42729852 ~ 42730451 (+) True G2237341
TU2559176 other downstream 2017259 43440853 ~ 43465829 (+) True G2238623
TU2559225 other downstream 2184987 43608581 ~ 43623303 (+) True G2238671
TU2560116 other downstream 2976291 44399885 ~ 44427686 (+) True G2239435

Expression Profile