RNA id: TU2557349


Basic Information

Item Value
RNA id TU2557349
length 7068
lncRNA type antisense_over
GC content 0.41
exon number 6
gene id G2236956
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42093309 ~ 42101005 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTATTGCATTCAGTTAGCATACAAAGCAATTATGATGCACATCTTGAAAGACAGCCATGAAATgttcaaaaacatgtttttctcccCAATACTTCAATAAGAACTTCAGGGGGCTGGTAGGAATAATATACGCTCCTctacgtatttatttggacagtgaatctaaaacttttaatttggttgtatactccagcattttggatttgagattaaATGTTTCATACGAGACGACAGTGCAGAATGCCACcgtttatttgagggtattttcatacatagcCGTTTTAGCGGCTAGACATGAATGCACTTATAGTATTCAAACAAATTCACTTACAGATGCACAAAGGTTCATGAACCAAAAAcaaacctctcaccattaccaacaaCATGGGAGGTTAGCATAATTTGTTCAGGGGTGGGGGATATACTATTCATGCCTGTAACGTTCTCACTCATCAATATTCACAATTAATTCCTGATTATCCCTAATCATGGTAggatccacattaatgtagaattaaagTGACTCACATGACAACCATTAAACATTAATTTCTATTGGTCACAACATCATcccaaacacaaccaaaacaaactgcaaatgcatccaacaaatttgtaaagtcacaagcttgatgtagtcattgcgtgtaGGGATATGGGACCATATACTAAACTTTTCTCTCATtgtaatacactataagtgaatttgtccaaatacttactacaccttcaaatggggggggggggggggggggggactagatacacaaagtgctttcatttctaaacagtaAAAAAGAAGTATGAAAATATCCTCAAATAAAAAGGTGACATCATCTACTGTTGCCTCATAAAAAaattgatctcaaatccaaaaagctagagtatagagccaaattaaaagttttagcttcactgtccaaataaatatgtaggggAGTGTAGTATCCTCATCACACTACCAATGGAGCAGAGGTCATCACCCCTGTGAGCAATCTAATCGAGCGCAAGAACAGTGTGTGTGCGCCCTCAATGAGCATTAAAAAAAGAGCCTTGGTGCTTTCCTCCATACGACAACCTGTGAGTGTttacaggtttaaaaaaataatattttaaggCAAATACATTACTTAAAGTGATCCTGCAGaggttttgtataatttcagccagtattTTTGAAAGTAGTGCTCACAAGCCAAAACGGATCCCGAAAATTGTGTACTACATCCTGCATTTTGTAGAAATGCTGTTTTTTTTGCAATtcatatatgttacgaattcaaATTTATACAATATATTTTACGAATTTGTAAGCGCTTAAGATCCTAGACTGCATCTTTAATCTTCTACAAAGCAATAGGAATAAATTATGTTTTTCTTTACCAAAACAAGAGCCAAAAGAAAAGcTGAAATGGAATATAGCAAACAATCAGTTGGTGGGACATTGTGGAGAACTGTGGAAACAAAGAAAAACATCAGCAAGACGTGCAAAGGAAATGAGTTGGATCCTGTACCTCCTGCATTGTATCACTGTTGTTCATTTCCCCAATCAAACAAGGGCAGACATCAGCACAAATGGTGATTTGATGTGTCAACGTGATCATTGTTAAACTTAGGCATCAGTTCAGTAAACCACCCTACCATCGATAAAAAACTAaagcacacacaaaaacaaaacaaaatggttGATTACTAGCTATCCTATTTCAAATCTATGGTGAGCCTACTCGTAAATCTAAGAGTGGGCttattttaaaattaaaatataGGGTTGGAGTATTAGTTAGAATTATCACTAATATACTTTAACAGGCACTTCTGTTTTCATTTGTTTCTCATGTCATGGACTGCACTAACCAGACAAAGCTTTTATATTAGTTATTATTTCATTAAcattaaaaatcaaatcaaatcagaattTATTGGTCGTGTACACGGTCTgtagatgttatcgcaggtgcaacgaaatgcttatgtttctagctccaacagtgcagcaatatctagcaATAAAATCTACATTACCAAGTACATACATGTATAACCTTGCTGTTAACTAGCGACGTCTCTCTACCTACTGTACCTCATTCCTAGTTCTCGCActcctgcgctctctctctcgctcactaccCTGCTTTATGGTAAAATACATAGCACAATCCTTCCTGAAATACATTCACTGTCATATTACCATACCTTCCTATCAGTACCGGGGTAAAAAGTGCAACGCAGCAACATTTAACCATTAAAACACTTACTTCTTTTTTTTCCTGTCTGGTTGTTGTTACGATTTAGAATCTAATCTACAGATAATCTACACTTAACAGTTTTCTGTTCCTAAAATAACAATACTCAACATTAATATTTTGCAgattctgctgtgtgtgtgtgtttgtatatagtACATATTCATTGATATTTATCAAAATACATCAGTAACACAGGTGTCAGCAGACTACTTAATGttgaatcctaacttgagatccTAATCCTCTGAAAGTCCTCCATCACCCCAGGGCAGGGCCAGGAGGGTACAACAGAAACATTGTACGTTTCTTAACCGCAGCAATCTTTAAACACAACAGGAACAGAAAGAGGATATATCTGggacacagtgcattcggaaagtattcagacctctttacttattctacattttgttacgttgcagtgtcatgctgtttattatctatgcatagccactttacccCTAACTACATGTAGAAATTACCTtgactagcctgtacccctgcacaacctgcacattgactcggtacccccagtatacagcctcgttactgttattttactttttattacatttttttactaaagtttatttagtaaatattttcttaactctatttcttgaactgcattgttggttaagggcttgtaactaaGCGTTTCACAGTAAGCGTTTCACCTGTTGTAAACTAAGCGTTTCACCTGTTGTAAAACTAAGCGTTTCACCTGTTGTAAAACTAAGCGTTTCACCTGTTGTAAACTAAGCGTTTCACCTGTTGTAAACTAAGCGTTTCACCTGTTGTAAACTAAGCCTAAGCGTTTCACCTGTTGTAAACTAAGCGTTTCACCTGTTGTAAATTAAGCGTTTCACCTGTTGTAAATTAagctcaggtgcatcctgtttccattgatcatccttgatttgttcatacaacttgattggactctacctgtggtaaattaaattgattggacaggatttggaaatgcacacacttgtctactatataaggtcccacagttgacagtgcatgtcagagcaaaaacctagCCAGGAGGTAGAAAGAGTTATCGGTAGAgcacagagacaggattgtgtcgaggcacagatctggggaagggtaccaacacatttctgcagcattaaaggtccccaagaacaaagtggcctccatcattcgcaaatggaagaatcttggaaccaccaagactctacctagagctggccacccaatCGGgatagaagggccttggtcagggaggtgaccaagaacccgaagttcactctgtggaaatgggagtaccttctctgcagcactccaccaatcaggccttcatggtagagaggccagatcgaagtcactcctcagtaaaaggtgcatgacagcccacttggattttgccaaaagacacctaaaggactcggaccataagaaacaagattgtctggtctgatgaaaccaagatgaactctttggcctgaatgccaaatgttACGTCttgaggaaaccaggcaccgctcatcacctggccaataccatccctatggtgaagcatggtggtggcagcatcatgctgtgggatgttgtTCAGAGGGAGGGACTGGGaaaccagtcaggatcgagggaaagatgaacggagcaagagatccttgatgagagagatccttgatgaaaacctgctccagagcgctcaggacctcagatgggtgaacgttcaccttccaacaggacaacgaccctaagcacacagccaagacaactcaggagtggtcTCGGggcaagtctcaatgtccttgagtggcccagccagaggccggacttcaaatcaaatcaatgagctgaaaacaacaagtgtagaacttaccatgaaatgcttacttacaagcccttaaccaacagtgcagttcaagaacagttaaaaaataaaacaaaagaataacacaataacgaggctatatacagggggtaccggtaccgagtccgTGTGTggtggtacaggttagttgaggtcatttgtacatgtaggtaagggtgaagtgactatgcatagataataaacagcgagtagcagcagtgtacaaaacaaatggttcaatgtaatagtccggtggctaTTTGATTATtttttcagcagtcttatagcttgggggtagaagctgttgaagaGCCTTTTGGTCCGAGACATGGCGCTCCGTtaacgcttgccgtgcggtagcagagaaaacagtctatggacTTGAGTGACTGAAGTCTCTGACAATTGTATGGGTTATGCTCTGacactgcatatatatatatatatgtcctggatggcaggaatcttggccccagtgatatactgggccgtacgcactaccatctATAGCACCTTACGGTGAGAtgcccgagcagttgccataccagacggtgatgcaaccggtcaggatgctctcaatggtgcagccgtagaactttttgagaatctggggacccatgccaaatcttttcagccctcttcacgactgtcttggtctgtttggaccatgatagttggttggtgatgtggacaccaaggaacttgaaactcttcccgctccactacagccccgttgatgttaaggGCGGcttgttcggcccgccttttcctgttgtccacgatcagctcctttgtcttgctcacattgagagagaggttgttgtcctggaaccacactgccagttctctgacctcctccctataggctgtctcatagaTGAACCCGGTCGAACaattctggagagacctgaaaatagctgtgcagcgacactccccatccaacctgacagagtttgagaggatctgaatgggaagactcaaggctataatcactgccaaaggtgcttcaacaaagtactgagtaaagggtctgaatatttatctcaatgtaatatttcatattattattattatttttatacagttaaagtcagaagtttacatacacttaggttggagtcattaaaactaattttcaaccactccacaaatttcttgttaacaaactatagtttcggaaagtcgattaggacatctactttgtgcatgacaagtcatttttacaacaattgtttacagacagattatttcacttataattcactgtatcacaattccagtgggtcagaagtttacattcactaagttgactgtgcctttaaacagcttggaaaatttcagaaaattatgtcatggctttagaagcttctggtagactaattgacatcatttgagtaaataggaggtgtacctgtggatgtatttcaaggcctaccttccaactcagtgcctctttgcttgacatcatgggaaaatcagccaagacctcagaaagaaaattgtagacctccacaagtctggttattccttgggagaaatttccaaacgcctgaaggtaacatgttcatctgtacaaacaatagtacacgagtataaacaccatgcgaccatgcagccgtcataacgCTGAGGAagtagacgcgttctgtggtgcgaaaagtgcaaatcaatcccagaacagcagcaaaatgctccaaaaccgcaataaaaaaagccagactatggtttgcaactgcacatggggacaaagactgtactttttggagaaatgacctctggtctgatgaaacaaaaatagaactgtttggccataatgaccatcgttatgttaggaggaaaaagggtgaggcttgcaagccaaagaataccatccccaaccgtgaagcacaggggttgCAGCATTGtgttgttgggggtgctttgctgcaggaggaactggtgtacttcacaaaatagatggcaacatgaggaaggaaaaatatgtggatatattgaagcaacatttcaagacatcagtcaggaagtcaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccaaagtcgtggcaaaatagcgtaaggacaacaacgtcaaggtattggagtggccatcacaaagccatgacctcaatcccatagaaaatttgtgggcaaggaggcctacaaacccgactcagttacaccagctctgtcaggaggaatgagccaaaattcacccaacttatagtgggaagcttgtggaaggctacccaaaacgtttgacccaagttaaacaatttaaaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtaatgaaagaaataaaagctgaaataaatcactctgtactattattctgacatttcacattgttaaaataaaagtggtgatcctaactgacctaagacagggaatttttactctgattaaatgtcaggaattgtgaaacactgagtttaaatgtacttggataaacttctgacttcaactgtatgtcattattgtgtgtagattgatgaggggaaaaaacattttatcaattttaggATAATGCTGTaaagtagcaaaatgtggaaaaagtgaaggggtctgaatactttacgaatgcactgtacataaccTCCTTCTCTTAAACAAAACACTTACATTACAGaacttttttttttgcagaacTTCTCAATACATGATTGTGTGAAAGACAAGATCGGTGTCTGCCTGTCCTTATGTGGAAGCGAGGGATgaaaggaggagggaagagaggaagagatgcgGGTCGTATTGTTATCTTCAGGTGTAGACTTAGCTGCCCTGCTGCGTCTGGCCGTGCATGTGTTTGGCGACGTCATACACATACATGATGTCCGGCCTCTTCTCTGGGTCGGGGTTAATACACATATCTACCACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2557292 lncRNA upstream 70558 42022466 ~ 42022751 (+) True G2236904
TU2557238 lncRNA upstream 111674 41979899 ~ 41981635 (+) True G2236851
TU2557187 lncRNA upstream 147072 41945999 ~ 41946237 (+) True G2236804
TU2557184 lncRNA upstream 149846 41943263 ~ 41943463 (+) True G2236801
TU2557176 lncRNA upstream 155153 41937936 ~ 41938156 (+) True G2236793
TU2557461 lncRNA downstream 137274 42238279 ~ 42238581 (+) True G2237062
TU2557462 lncRNA downstream 137651 42238656 ~ 42238866 (+) True G2237063
TU2557463 lncRNA downstream 137963 42238968 ~ 42239260 (+) True G2237064
TU2557466 lncRNA downstream 140751 42241756 ~ 42242013 (+) True G2237067
TU2557472 lncRNA downstream 147380 42248385 ~ 42248590 (+) True G2237073
LOC110521005 mRNA upstream 39640 42012575 ~ 42053669 (+) True LOC110521005
XM_021598409.2 mRNA upstream 614888 41477485 ~ 41478421 (+) True LOC110520957
NM_001124667.2 mRNA upstream 625789 41458881 ~ 41467520 (+) True LOC110521832
XM_036968942.1 mRNA upstream 935308 41101017 ~ 41158001 (+) False LOC110521828
XM_021599717.2 mRNA upstream 1624730 40440495 ~ 40468579 (+) False pik3r3b
XM_036969301.1 mRNA downstream 225254 42326259 ~ 42501262 (+) False LOC110521838
XM_036969300.1 mRNA downstream 225254 42326259 ~ 42501263 (+) False LOC110521838
XM_036969293.1 mRNA downstream 225254 42326259 ~ 42506540 (+) False LOC110521838
XM_036969294.1 mRNA downstream 225254 42326259 ~ 42506540 (+) False LOC110521838
XM_036969296.1 mRNA downstream 225254 42326259 ~ 42506540 (+) False LOC110521838
TU2556385 other upstream 707316 41385660 ~ 41385993 (+) True G2236045
TU2555824 other upstream 972219 41102438 ~ 41121090 (+) False LOC110521828
TU2554595 other upstream 1948527 40143621 ~ 40144782 (+) True pik3r3b
TU2554140 other upstream 2285259 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 2916616 39174646 ~ 39176693 (+) True LOC110521001
TU2557666 other downstream 449315 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 628847 42729852 ~ 42730451 (+) True G2237341
TU2559176 other downstream 1339848 43440853 ~ 43465829 (+) True G2238623
TU2559225 other downstream 1507576 43608581 ~ 43623303 (+) True G2238671
TU2560116 other downstream 2298880 44399885 ~ 44427686 (+) True G2239435

Expression Profile