RNA id: TU2557466


Basic Information

Item Value
RNA id TU2557466
length 258
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G2237067
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 42241756 ~ 42242013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgatacaccatccaaagtgtaatgaataactttaccatgctcagagggatattcaatgtttaaaaaaattgttttacccatctaccagtaaatttccttctttgcgaggcattggaaaacctccctggtctttgtggttgaatctgtgtttgaaattcactgctggactgagggaccttacagatagttATTTTTGTGGCCTAGACAGGAGGTAGTCATAACAAAAAtcttgttaaacactattattgtacacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2557463 lncRNA upstream 2496 42238968 ~ 42239260 (+) True G2237064
TU2557462 lncRNA upstream 2890 42238656 ~ 42238866 (+) True G2237063
TU2557461 lncRNA upstream 3175 42238279 ~ 42238581 (+) True G2237062
TU2557348 lncRNA upstream 140751 42093309 ~ 42101005 (+) False G2236956
TU2557349 lncRNA upstream 140751 42093309 ~ 42101005 (+) True G2236956
TU2557472 lncRNA downstream 6372 42248385 ~ 42248590 (+) True G2237073
TU2557487 lncRNA downstream 25268 42267281 ~ 42267575 (+) True G2237088
TU2557495 lncRNA downstream 38920 42280933 ~ 42281378 (+) True G2237096
TU2557504 lncRNA downstream 43577 42285590 ~ 42285791 (+) True G2237104
TU2557628 lncRNA downstream 269040 42511053 ~ 42511282 (+) True G2237210
LOC110521005 mRNA upstream 188087 42012575 ~ 42053669 (+) True LOC110521005
XM_021598409.2 mRNA upstream 763335 41477485 ~ 41478421 (+) True LOC110520957
NM_001124667.2 mRNA upstream 774236 41458881 ~ 41467520 (+) True LOC110521832
XM_036968942.1 mRNA upstream 1083755 41101017 ~ 41158001 (+) False LOC110521828
XM_021599717.2 mRNA upstream 1773177 40440495 ~ 40468579 (+) False pik3r3b
XM_036969301.1 mRNA downstream 84246 42326259 ~ 42501262 (+) False LOC110521838
XM_036969300.1 mRNA downstream 84246 42326259 ~ 42501263 (+) False LOC110521838
XM_036969293.1 mRNA downstream 84246 42326259 ~ 42506540 (+) False LOC110521838
XM_036969294.1 mRNA downstream 84246 42326259 ~ 42506540 (+) False LOC110521838
XM_036969296.1 mRNA downstream 84246 42326259 ~ 42506540 (+) False LOC110521838
TU2556385 other upstream 855763 41385660 ~ 41385993 (+) True G2236045
TU2555824 other upstream 1120666 41102438 ~ 41121090 (+) False LOC110521828
TU2554595 other upstream 2096974 40143621 ~ 40144782 (+) True pik3r3b
TU2554140 other upstream 2433706 39800273 ~ 39808050 (+) False LOC110521817
TU2553172 other upstream 3065063 39174646 ~ 39176693 (+) True LOC110521001
TU2557666 other downstream 308307 42550320 ~ 42553186 (+) False LOC110521840
TU2557776 other downstream 487839 42729852 ~ 42730451 (+) True G2237341
TU2559176 other downstream 1198840 43440853 ~ 43465829 (+) True G2238623
TU2559225 other downstream 1366568 43608581 ~ 43623303 (+) True G2238671
TU2560116 other downstream 2157872 44399885 ~ 44427686 (+) True G2239435

Expression Profile