RNA id: TU2558557


Basic Information

Item Value
RNA id TU2558557
length 1946
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2238067
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43193643 ~ 43196720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctccaacgaTTCATTGCCCCTTCCCAGGATCCATCACTTACTTGCCTTGTCAGTCCTAACGTTCTACACAGTAACCAGACTCGGTATAGTCACAATATAAGGTCGGGCTAGAGAAAACCTAACGTTAAGAATAACAAATATGTCATTCAACATGCAAATACAAAAACTGAGgcaaatgtagaaaaaaaagacTAGAGCAGATTGTGCTGGGGGGCTGGCATGTTAAAACAAAATCATAATGCCAACCCCATGTCAATCCAATCTGACAATCCAGTAAAAATCCTTTAAAAAAACGCATTAAAGGCCATATAAAATACTATTGTTGCATATTTCCCCGCTGAACAGATATTTGAAAACCCAAAGGACAACTTTTCTAACAGGCCCAACTGAGGACCAAAAAGACAGAGTTTGCTTATGAAGGATTATCAAGCCTCATCGCACATTGAACCAAAACGTCTAGTGGGAGCTTCTGGTGATCATCTAACTTCAACATTCACTTCATGATCAGATATCTTTGAATCCCTTGCTGATTTGCAGTGCTTTGAAATCTCAATTgcattaacaacaacaaaaaaatctaaatgtaagaGACATAATAGCTCATGATAAATACTAAAAATGCTAACTTTATATTATAGGTCCTACAATGGCACCAGATGCAAAGAACCCATCTgggctattttacagtaaaataaaaaataatacttGTAGCATGATATAAAAAGTACATGGTATAAAACACAATTCTATGTATGCACGTCAGCGCATAACCGAGGCATGAGCTTTTAGTGTTATAATAACTATATTGGAATCAGCTTGAGTACAATTAATAAaatgacaaaaacaaaaaataaaaatcaaacaATACAATTTTAAAGTTTTAAAGCTTTTGTAGTGACATTGTAGCGAATGACAGGAAACATTTGGTATACAACACACTTTGCTCTCATGGCCGCTAACGCTGATATATAAGTTAATCCAAGATGGTTGTCTTTGTGAACAGAAGCAACAGTAACAAAGCCATTCATTCTAACCCAAACTGACAGTTAGGATACTGTTGGTGATATAGAAGAAGGTTTACAGTGCTGTTGCCAAACGAGGTCCACTTTATACAAAGAACCTACAGACTGGACAACCTTGTGGCCAGTAAAGATCCATTTCATAACTGCAGTACGTTAAGCAATAGCTCCACCTAGTGGTGAAAAAGACTCCCTGCATACATTTTGACAGTCACGTCAAAGCAATACCATTGGAAGCCAAATGTATTGATTTTCACCAAGTACTTGTTCCACATAGAAAGTCACCCcaagaaagaaatgaaagctgtgGCATTGCTTTAATCAATTGTGATTCCAAAACCAGAGTGGGTTATCGGAGGAAGTCCTATAGAACATACAAAGCCAAAAGTACTAAAGTTGTTAGTTTACCATACAGTAACTTCAATAGTGAAGTATACTTTAATACGTGTCATGTTTTGATTTGCTTTTGTTCTCTCAAGGCTTTGATTAATACTCGATCTTTGATCCAAAACTCAATTCAGATTGACGATATGTGGTCTGGCAGACAGAGGTTAGACAGACAGAGCATAATATTACTGTACACATGGAGAAGTGGGAAGAAGAGATAATGCTGATTTGAAAAAGTAGCAAAAGGTAGTCTTTAGATATGTGGAGTGAGTCTTTCATTCTGTTTGTATGGCTGTGAATATATGTGTAtagaagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacagccaAGTGAGGAAGGGCTCGCTCTTGTTGAGGACTGACTCCACGTCGTTGAGGATGGGGATGAGGTCTGCTCCCTCCAAGGTTCCCAGGTCCACGTTAGTGCCTGGCAGCGAGTCCAAGAAGTCTGGGAAGCGGCTGTGCTGGGGCACGTTCATATTGCCCGCCTGGGCCATGCTCTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2558505 lncRNA upstream 39826 43152399 ~ 43154895 (+) True G2238021
TU2558541 lncRNA upstream 44320 43150201 ~ 43150401 (+) True G2238055
TU2558522 lncRNA upstream 97100 43097399 ~ 43097621 (+) True G2238038
TU2558456 lncRNA upstream 129108 43064375 ~ 43065613 (+) True G2237974
TU2558473 lncRNA upstream 150564 43043944 ~ 43044157 (+) True G2237991
TU2558644 lncRNA downstream 109690 43306410 ~ 43362850 (+) True G2238147
TU2559188 lncRNA downstream 262403 43459123 ~ 43518012 (+) True G2238634
TU2559218 lncRNA downstream 299743 43496463 ~ 43496710 (+) True G2238664
TU2559259 lncRNA downstream 380581 43577301 ~ 43592677 (+) True G2238687
TU2559343 lncRNA downstream 518547 43715267 ~ 43743741 (+) True G2238748
XM_021599782.2 mRNA upstream 4969 43183333 ~ 43189752 (+) True LOC110521852
XM_021599777.2 mRNA upstream 67639 43104346 ~ 43127082 (+) False LOC110521849
XM_036968833.1 mRNA upstream 67639 43104346 ~ 43127082 (+) True LOC110521849
XM_021598445.2 mRNA upstream 90565 43098446 ~ 43104156 (+) True LOC110521006
XM_021599769.2 mRNA upstream 177692 42974810 ~ 43017029 (+) True LOC110521846
XM_021599788.2 mRNA downstream 107118 43303838 ~ 43317446 (+) True LOC110521855
XM_021599790.2 mRNA downstream 204464 43401184 ~ 43414113 (+) False zranb2
XM_021599791.2 mRNA downstream 204464 43401184 ~ 43414113 (+) True zranb2
XM_036969074.1 mRNA downstream 339504 43536224 ~ 43546571 (+) False LOC110513710
XM_036969075.1 mRNA downstream 339504 43536224 ~ 43546571 (+) True LOC110513710
TU2557776 other upstream 464270 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 641535 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 1808728 41385660 ~ 41385993 (+) True G2236045
TU2555824 other upstream 2073631 41102438 ~ 41121090 (+) False LOC110521828
TU2554595 other upstream 3049939 40143621 ~ 40144782 (+) True pik3r3b
TU2559176 other downstream 244133 43440853 ~ 43465829 (+) True G2238623
TU2559225 other downstream 411861 43608581 ~ 43623303 (+) True G2238671
TU2560116 other downstream 1203165 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 1359474 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 1359594 44556314 ~ 44563618 (+) True LOC110521895

Expression Profile