RNA id: TU2559343


Basic Information

Item Value
RNA id TU2559343
length 561
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G2238748
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 43715267 ~ 43743741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgttcagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaatgacactttttatggatatctttaagaaatggctttcttcttgcctctcttccataaaggccagatttgtgcaatatacaactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcaattcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttttccttgtatgagctgaaagtttagaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2559259 lncRNA upstream 122590 43577301 ~ 43592677 (+) True G2238687
TU2559188 lncRNA upstream 197255 43459123 ~ 43518012 (+) True G2238634
TU2559218 lncRNA upstream 218557 43496463 ~ 43496710 (+) True G2238664
TU2558644 lncRNA upstream 352417 43306410 ~ 43362850 (+) True G2238147
TU2558558 lncRNA upstream 518547 43194721 ~ 43196720 (+) False G2238067
TU2559859 lncRNA downstream 261174 44004915 ~ 44005214 (+) True G2239203
TU2559865 lncRNA downstream 268031 44011772 ~ 44012006 (+) True G2239209
TU2559891 lncRNA downstream 283636 44027377 ~ 44027711 (+) True G2239235
TU2559903 lncRNA downstream 289096 44032837 ~ 44033097 (+) True G2239247
TU2559930 lncRNA downstream 311521 44055262 ~ 44055700 (+) True G2239274
XM_036969084.1 mRNA upstream 91966 43614431 ~ 43623301 (+) True LOC110521009
XM_036969190.1 mRNA upstream 106576 43596311 ~ 43608691 (+) True LOC110521008
XM_036968809.1 mRNA upstream 123999 43581526 ~ 43591268 (+) False LOC110521861
XM_036968808.1 mRNA upstream 123999 43583000 ~ 43591268 (+) True LOC110521861
XM_036969106.1 mRNA upstream 138820 43566590 ~ 43576447 (+) False LOC110515334
XM_036968953.1 mRNA downstream 94779 43838520 ~ 43845724 (+) False LOC110521871
XM_036968952.1 mRNA downstream 94783 43838524 ~ 43845724 (+) False LOC110521871
XM_021599802.2 mRNA downstream 94785 43838526 ~ 43845724 (+) True LOC110521871
XR_005040911.1 mRNA downstream 161765 43905506 ~ 43910872 (+) False LOC118945797
XR_005040912.1 mRNA downstream 162165 43905906 ~ 43910872 (+) True LOC118945797
TU2559225 other upstream 91964 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 249438 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 984816 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1162081 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2329274 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 656144 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 812453 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 812573 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 831115 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 1109960 44853701 ~ 44860336 (+) False G2239933

Expression Profile