RNA id: TU2559859


Basic Information

Item Value
RNA id TU2559859
length 300
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G2239203
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44004915 ~ 44005214 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgttgggtatgacgctacaagcttggcacgcctgtatttggggagtttctcccattcttctctgcaagtCATCTCtagctcagtcaggttggatgggtagctTCACtgcccagctattttcaggtctctccagagatgatcgatcgggttcaagtccgagctctgactgggccactcaaggacattcagagacttgtcccgaagtcactcccgcgttgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttcaccccagtctgaggttctgagcgctctggagc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2559343 lncRNA upstream 261174 43715267 ~ 43743741 (+) True G2238748
TU2559259 lncRNA upstream 412238 43577301 ~ 43592677 (+) True G2238687
TU2559188 lncRNA upstream 486903 43459123 ~ 43518012 (+) True G2238634
TU2559218 lncRNA upstream 508205 43496463 ~ 43496710 (+) True G2238664
TU2558644 lncRNA upstream 642065 43306410 ~ 43362850 (+) True G2238147
TU2559865 lncRNA downstream 6558 44011772 ~ 44012006 (+) True G2239209
TU2559891 lncRNA downstream 22163 44027377 ~ 44027711 (+) True G2239235
TU2559903 lncRNA downstream 27623 44032837 ~ 44033097 (+) True G2239247
TU2559930 lncRNA downstream 50048 44055262 ~ 44055700 (+) True G2239274
TU2559933 lncRNA downstream 53182 44058396 ~ 44058669 (+) True G2239277
XR_005040911.1 mRNA upstream 94043 43905506 ~ 43910872 (+) False LOC118945797
XR_005040912.1 mRNA upstream 94043 43905906 ~ 43910872 (+) True LOC118945797
XM_036968953.1 mRNA upstream 159191 43838520 ~ 43845724 (+) False LOC110521871
XM_036968952.1 mRNA upstream 159191 43838524 ~ 43845724 (+) False LOC110521871
XM_021599802.2 mRNA upstream 159191 43838526 ~ 43845724 (+) True LOC110521871
XM_036968767.1 mRNA downstream 56839 44062053 ~ 44100935 (+) False LOC110521011
XM_036968768.1 mRNA downstream 56839 44062053 ~ 44100935 (+) False LOC110521011
XM_036968650.1 mRNA downstream 108553 44113767 ~ 44124283 (+) False LOC110521874
XM_021599805.2 mRNA downstream 108555 44113769 ~ 44124280 (+) True LOC110521874
XM_021599808.2 mRNA downstream 119193 44124407 ~ 44145448 (+) True LOC110521876
TU2559225 other upstream 381612 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 539086 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 1274464 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1451729 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2618922 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 394671 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 550980 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 551100 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 569642 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 848487 44853701 ~ 44860336 (+) False G2239933

Expression Profile