RNA id: TU2559891


Basic Information

Item Value
RNA id TU2559891
length 335
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2239235
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44027377 ~ 44027711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGACTCGaatccatactataccatattgGGTGAAAACGTATTAAACGGGCTCAACAAGGGCTACCGAACATGTAAGACGCTGAGCAGACCAATGGATGGCGGTCAGAGCTCTCAATTAACGTTACATTCACTTTCATCCCGGCTGTGCTCAGCGATGCATATTTTTTACTTCCAGGTTTGATCACTGACACCTTCGGACGGATATACTTATATTCCCCcacttttgttttgtttcgttatttattttacaatcctTACATTATTCTTACTACCATACCATTTATTTATTGCTTGCAGGGGACTGGGGGTGATGGTTGGGAGGGGGCAGACACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2559865 lncRNA upstream 15371 44011772 ~ 44012006 (+) True G2239209
TU2559859 lncRNA upstream 22163 44004915 ~ 44005214 (+) True G2239203
TU2559343 lncRNA upstream 283636 43715267 ~ 43743741 (+) True G2238748
TU2559259 lncRNA upstream 434700 43577301 ~ 43592677 (+) True G2238687
TU2559188 lncRNA upstream 509365 43459123 ~ 43518012 (+) True G2238634
TU2559903 lncRNA downstream 5126 44032837 ~ 44033097 (+) True G2239247
TU2559930 lncRNA downstream 27551 44055262 ~ 44055700 (+) True G2239274
TU2559933 lncRNA downstream 30685 44058396 ~ 44058669 (+) True G2239277
TU2559936 lncRNA downstream 31879 44059590 ~ 44059815 (+) True G2239280
TU2559946 lncRNA downstream 70553 44098264 ~ 44100893 (+) True LOC110521011
XR_005040911.1 mRNA upstream 116505 43905506 ~ 43910872 (+) False LOC118945797
XR_005040912.1 mRNA upstream 116505 43905906 ~ 43910872 (+) True LOC118945797
XM_036968953.1 mRNA upstream 181653 43838520 ~ 43845724 (+) False LOC110521871
XM_036968767.1 mRNA downstream 34342 44062053 ~ 44100935 (+) False LOC110521011
XM_036968768.1 mRNA downstream 34342 44062053 ~ 44100935 (+) False LOC110521011
XM_036968650.1 mRNA downstream 86056 44113767 ~ 44124283 (+) False LOC110521874
XM_021599805.2 mRNA downstream 86058 44113769 ~ 44124280 (+) True LOC110521874
XM_021599808.2 mRNA downstream 96696 44124407 ~ 44145448 (+) True LOC110521876
TU2559225 other upstream 404074 43608581 ~ 43623303 (+) True G2238671
TU2559176 other upstream 561548 43440853 ~ 43465829 (+) True G2238623
TU2557776 other upstream 1296926 42729852 ~ 42730451 (+) True G2237341
TU2557666 other upstream 1474191 42550320 ~ 42553186 (+) False LOC110521840
TU2556385 other upstream 2641384 41385660 ~ 41385993 (+) True G2236045
TU2560116 other downstream 372174 44399885 ~ 44427686 (+) True G2239435
TU2560209 other downstream 528483 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other downstream 528603 44556314 ~ 44563618 (+) True LOC110521895
TU2560216 other downstream 547145 44574856 ~ 44575278 (+) True G2239510
TU2560687 other downstream 825990 44853701 ~ 44860336 (+) False G2239933

Expression Profile