RNA id: TU2560742


Basic Information

Item Value
RNA id TU2560742
length 250
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G2239966
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44849881 ~ 44850130 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctgtgtaatgatcatgctgtttaatcagcttcttggtatgccacacctgtcagctggatggattattttgggaaaggagaaattctcactaacatggatgtaaacaaagtTGTGTGCAAAATTTGAGAGAGATGTATAATTTCTGGGACAATTTATTttagctcattaaacatgggaccaacatgttgcgtttatattttgttcagtatatactgtacattctacTCAAAGGCAGTCAACAATTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2560732 lncRNA upstream 14681 44830885 ~ 44835200 (+) True G2239956
TU2560724 lncRNA upstream 22694 44826962 ~ 44827187 (+) True G2239953
TU2560721 lncRNA upstream 26453 44823184 ~ 44823428 (+) True G2239950
TU2560671 lncRNA upstream 76372 44773266 ~ 44773509 (+) True G2239925
TU2560666 lncRNA upstream 84219 44765180 ~ 44765662 (+) True G2239920
TU2560686 lncRNA downstream 3348 44853478 ~ 44860336 (+) False G2239933
TU2560682 lncRNA downstream 3571 44853701 ~ 44860893 (+) False G2239933
TU2560685 lncRNA downstream 3571 44853701 ~ 44860336 (+) False G2239933
TU2560695 lncRNA downstream 3571 44853701 ~ 44860336 (+) False G2239933
TU2560696 lncRNA downstream 3571 44853701 ~ 44860893 (+) True G2239933
LOC110521014 mRNA upstream 1527 44838387 ~ 44848354 (+) True LOC110521014
XM_021599857.2 mRNA upstream 46356 44784210 ~ 44803525 (+) False LOC110521908
XM_021599859.2 mRNA upstream 46356 44784210 ~ 44803525 (+) False LOC110521908
XM_021599858.2 mRNA upstream 46356 44784214 ~ 44803525 (+) True LOC110521908
XM_036969165.1 mRNA upstream 66798 44779950 ~ 44783083 (+) False LOC110521907
XM_036968891.1 mRNA downstream 281630 45131760 ~ 45139316 (+) False LOC110521916
XM_021599876.2 mRNA downstream 281631 45131761 ~ 45139316 (+) False LOC110521916
XM_036968890.1 mRNA downstream 281631 45131761 ~ 45139316 (+) False LOC110521916
XM_036968892.1 mRNA downstream 281633 45131763 ~ 45139316 (+) True LOC110521916
XM_021599877.2 mRNA downstream 300236 45150366 ~ 45170704 (+) True LOC110521917
TU2560216 other upstream 274603 44574856 ~ 44575278 (+) True G2239510
TU2560209 other upstream 286263 44556194 ~ 44563618 (+) False LOC110521895
TU2560208 other upstream 286263 44556314 ~ 44563618 (+) True LOC110521895
TU2560116 other upstream 422195 44399885 ~ 44427686 (+) True G2239435
TU2559225 other upstream 1226578 43608581 ~ 43623303 (+) True G2238671
TU2560687 other downstream 3571 44853701 ~ 44860336 (+) False G2239933
TU2560689 other downstream 3571 44853701 ~ 44860336 (+) False G2239933
TU2560690 other downstream 3571 44853701 ~ 44860336 (+) False G2239933
TU2560694 other downstream 3571 44853701 ~ 44858993 (+) False G2239933
TU2560979 other downstream 114640 44964770 ~ 44965537 (+) False G2240165

Expression Profile