RNA id: TU2560745


Basic Information

Item Value
RNA id TU2560745
length 344
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G2239969
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 44864159 ~ 44864502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGACACTTTCTTGTTCTGAACTTTTAATGCGAGATGGGCAGGTGTGGCTTTTTGACAATGAtcacaagagcagctgctcaccgatttgacgGCTTGTAACAAGGCTGCATGCGATTACTACTACTGTGTCTCTGCAcatccaatggcaatgtccgtGATAGCTATAATTCCGGGAGGCTTTTGgtgatttgacagctccaatgcAGTTACACCTCCGACATCGCCTTAATAAAAACAATGTTATCGGTTATCAAGGGTTAAGGCAGAACTGATTGAATCTAGCTTAGTGGAGCATTTTTTTGAGTGTAAAACCGACATACAATCTATGTTTTTGTGATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2560682 lncRNA upstream 3266 44853701 ~ 44860893 (+) False G2239933
TU2560696 lncRNA upstream 3266 44853701 ~ 44860893 (+) True G2239933
TU2560686 lncRNA upstream 3823 44853478 ~ 44860336 (+) False G2239933
TU2560685 lncRNA upstream 3823 44853701 ~ 44860336 (+) False G2239933
TU2560695 lncRNA upstream 3823 44853701 ~ 44860336 (+) False G2239933
TU2560746 lncRNA downstream 3162 44867664 ~ 44867870 (+) True G2239970
TU2560747 lncRNA downstream 3549 44868051 ~ 44868309 (+) True G2239971
TU2560748 lncRNA downstream 4372 44868874 ~ 44869196 (+) True G2239972
TU2560708 lncRNA downstream 4841 44869343 ~ 44871658 (+) True G2239937
TU2560950 lncRNA downstream 77041 44941543 ~ 44941796 (+) True G2240149
LOC110521014 mRNA upstream 15805 44838387 ~ 44848354 (+) True LOC110521014
XM_021599857.2 mRNA upstream 60634 44784210 ~ 44803525 (+) False LOC110521908
XM_021599859.2 mRNA upstream 60634 44784210 ~ 44803525 (+) False LOC110521908
XM_021599858.2 mRNA upstream 60634 44784214 ~ 44803525 (+) True LOC110521908
XM_021599856.2 mRNA upstream 81076 44779956 ~ 44783083 (+) True LOC110521907
XM_036968891.1 mRNA downstream 267258 45131760 ~ 45139316 (+) False LOC110521916
XM_021599876.2 mRNA downstream 267259 45131761 ~ 45139316 (+) False LOC110521916
XM_036968890.1 mRNA downstream 267259 45131761 ~ 45139316 (+) False LOC110521916
XM_036968892.1 mRNA downstream 267261 45131763 ~ 45139316 (+) True LOC110521916
XM_021599877.2 mRNA downstream 285864 45150366 ~ 45170704 (+) True LOC110521917
TU2560687 other upstream 3823 44853701 ~ 44860336 (+) False G2239933
TU2560689 other upstream 3823 44853701 ~ 44860336 (+) False G2239933
TU2560690 other upstream 3823 44853701 ~ 44860336 (+) False G2239933
TU2560694 other upstream 5166 44853701 ~ 44858993 (+) False G2239933
TU2560216 other upstream 288881 44574856 ~ 44575278 (+) True G2239510
TU2560979 other downstream 100268 44964770 ~ 44965537 (+) False G2240165
TU2560980 other downstream 100376 44964878 ~ 44965537 (+) True G2240165
TU2561056 other downstream 193515 45058017 ~ 45125710 (+) False G2240221
TU2562472 other downstream 1296702 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile