RNA id: TU2562461


Basic Information

Item Value
RNA id TU2562461
length 259
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G2241471
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 46128846 ~ 46129104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacataaaccttttaccttatcataggTAGAcaaattgcaaatgattaaatccttccaatagaaagaAAACCATTTTTTGTTACAAAAAGAACTTGAATTAAATTAGTTGAGtgttcacatgggatgatttcactgaacaacaaaataaagggaatactgaatgatccccaatgatccattgcatctcctaaaaacgttttcaacatacattgGGGCAAACAATTATTTGGTCAGCCCCCAattttgcaagttctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2562418 lncRNA upstream 75135 46052515 ~ 46053711 (+) True G2241428
TU2562388 lncRNA upstream 110308 46014296 ~ 46018538 (+) True G2241398
TU2562381 lncRNA upstream 116363 46004383 ~ 46012483 (+) True G2241393
TU2562380 lncRNA upstream 118912 46001753 ~ 46009934 (+) True G2241392
TU2562375 lncRNA upstream 123306 45997309 ~ 46005540 (+) True G2241387
TU2562463 lncRNA downstream 2847 46131951 ~ 46132500 (+) True G2241473
TU2562360 lncRNA downstream 10836 46139940 ~ 46146852 (+) True LOC110521935
TU2562361 lncRNA downstream 22510 46151614 ~ 46152373 (+) True G2241373
TU2562362 lncRNA downstream 23547 46152651 ~ 46152958 (+) True G2241374
TU2562482 lncRNA downstream 67154 46196258 ~ 46240927 (+) True G2241489
XM_036969007.1 mRNA upstream 40749 46062883 ~ 46088097 (+) True LOC110521019
XM_021599907.2 mRNA upstream 148527 45935243 ~ 45980319 (+) False LOC110521932
XM_021599906.2 mRNA upstream 148527 45935244 ~ 45980319 (+) False LOC110521932
XM_021599908.2 mRNA upstream 149133 45935245 ~ 45979713 (+) True LOC110521932
XM_021599905.2 mRNA upstream 194902 45928279 ~ 45933944 (+) True LOC110521931
XR_002473238.2 mRNA downstream 10834 46139938 ~ 46146858 (+) False LOC110521935
XM_036969312.1 mRNA downstream 24278 46153382 ~ 46157357 (+) True LOC118945812
XM_036968883.1 mRNA downstream 32068 46161172 ~ 46190655 (+) False LOC110521020
XM_036968884.1 mRNA downstream 32068 46161172 ~ 46190655 (+) False LOC110521020
XM_036968885.1 mRNA downstream 32068 46161172 ~ 46190655 (+) False LOC110521020
TU2561056 other upstream 1003136 45058017 ~ 45125710 (+) False G2240221
TU2560979 other upstream 1163309 44964770 ~ 44965537 (+) False G2240165
TU2560980 other upstream 1163309 44964878 ~ 44965537 (+) True G2240165
TU2560690 other upstream 1268510 44853701 ~ 44860336 (+) False G2239933
TU2562472 other downstream 32100 46161204 ~ 46181932 (+) True LOC110521020

Expression Profile