RNA id: XM_036969659.1



Basic Information


Item Value
RNA id XM_036969659.1
length 882
RNA type mRNA
GC content 0.67
exon number 1
gene id LOC118945992
representative True

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 4787439 ~ 4788320 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGAAAGAGGCTCGAAAACAGAATATCAGGAACAGATTAGACCAGCCCAACACAGCCCACAGCCCCACCACACAGCGCACAGCCCCACCACACAGCCCACAGTCCCAGCACACAGCCCACAGCCCCAGCACACAGTCCCAGCCCACAGCCCCACCACACAGCCCACAGTCCCAGCCCACAGCCCCAGCACACAGTCCCAGCCCACAGCAAACAGTCCCAGCACACAGTCCCAACCCACAGCCCCACCACACAGCCCACAGCCCACAGCCCCACCACACAGCCCCACCACACAGCCCACAGCCCCACCACACAGCCCCAGCCCACATCCTACAGCCCCACCACACAGCTCACAGCCCCACCACACAGTCCCAGCCCACAGCCCTTAGCACACAGTCCCAGCCCACAGCACACAGTCCCAGCCCACAGCCCCACCACACAGCCCACAGTCCCAGCCCACAGCCCCACCACACAGCCCCAGCCCCACCATACAGCCCCAGCCCACAACCCCACCACACAGCCCACAGCCCCACCACACAGCCACAGCCCCAGCCCAACCACACAGCCCACAGCCCCACCACACAGTCCCAGCCCACAGCCCACAGCCCCACCACACAGCCCCAGCCCCACCACACAGCCCACAgccccaacacacagccccagccCACAGCCCACAGCCCCACCACACAGCCCCAGCCCACAGCCCCACCACACAGCCCCAGCCCACAGTCCCAGCCCACAGCCACAGTCCCAGCCCACAGCCCCACAGCCCACAGTCGCAGCCCACAGACCACAGTTCCAGCACACAGTCCCACCACACAGCCCACAGTCCCAGCCCCACCACACACCCCACAGCCCCACCACACAGCCCACAGCTCCAGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2567523 lncRNA downstream 54101 4733066 ~ 4733338 (-) True G2245270
TU2567518 lncRNA downstream 57732 4729352 ~ 4729707 (-) True G2245265
TU2567513 lncRNA downstream 62706 4724417 ~ 4724733 (-) True G2245260
TU2567483 lncRNA downstream 79055 4708181 ~ 4708384 (-) True G2245238
TU2567455 lncRNA downstream 90917 4658687 ~ 4696522 (-) True G2245219
TU2567648 lncRNA upstream 52422 4840742 ~ 4841111 (-) True G2245352
TU2567658 lncRNA upstream 55869 4844189 ~ 4846096 (-) True G2245358
TU2567676 lncRNA upstream 75400 4863720 ~ 4863974 (-) True G2245376
TU2567807 lncRNA upstream 168657 4956977 ~ 4960423 (-) True G2245487
TU2567823 lncRNA upstream 197957 4986277 ~ 4986786 (-) True G2245500
XM_021583225.2 mRNA downstream 193134 4589433 ~ 4594305 (-) False LOC110504469
XR_005041129.1 mRNA downstream 193134 4589433 ~ 4594305 (-) False LOC110504469
XM_036970240.1 mRNA downstream 496948 4237048 ~ 4290491 (-) True LOC110513918
XM_036970239.1 mRNA downstream 500242 4236169 ~ 4287197 (-) False LOC110513918
XM_036970241.1 mRNA downstream 500242 4236169 ~ 4287197 (-) False LOC110513918
XM_036969869.1 mRNA upstream 700409 5488729 ~ 5526785 (-) False LOC110504358
XM_036969870.1 mRNA upstream 700409 5488729 ~ 5526792 (-) False LOC110504358
XM_036969842.1 mRNA upstream 744539 5532859 ~ 5589946 (-) False LOC110504491
XM_036969840.1 mRNA upstream 744539 5532859 ~ 5604780 (-) False LOC110504491
XM_036969841.1 mRNA upstream 744539 5532859 ~ 5604780 (-) True LOC110504491
TU2567370 other downstream 165449 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 674438 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 674438 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 674438 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 686767 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 1059799 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 1059799 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 2082267 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 2150303 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 2159800 6948120 ~ 7024539 (-) True G2247565

Expression Profile