RNA id: XM_036969841.1


Basic Information

Item Value
RNA id XM_036969841.1
length 5997
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110504491
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 5532859 ~ 5604780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcagagagcgagagagaaaaagagagagagagagagaaagagagaaagagagagagatatgagagagttCGACCCAGACAGAGGTAGAAGAGGGAGCCCTGAGGAGCTAAAAAGGGGCAGGACAAACTAGCCACGCGCCTCGCACACACAGACCCACCGGGAGTACAGGTGGTAATGTTCCAGACGTGGAGATCAGAACCAATGGAGATCAGCCTctcatgacaacaacaacaacaacaacttgaCTCTTCCTGAATACCACAGCACCACGTTCTACCGTACACTCCTTCAATAGGGACCGGAGAGACAGATCACCCAGACTTACAGTTGAAGTATCATCCCAGACTGGATAAACAACTAATTTCCCTTAACATAGACATTGTTATCTCCTCTAAAAACAACCTAAATAAACCAACTGACAGCTGGAATTGCAGAGGGATCAGACTGAGAACTGCCTGGGCCTCAGCTCAAATGACAATGTACGGATATAGTGGTAATGTATGGATAGAATGGTAATGTATGGATATAATGGTAATGTATGGATATAATGGTAATGTATTGATATAATGGTAATGTATTGATATAATGGTAATGTATTGATATAATGGTAATGTATTGATATaatggtaacatactgtacatctCTGCATCTAATCCAAACCAATATCCGTCAGGACTAAACCGTGACTCCCAGCATTGActcctggatggatggatggatgagaataataaaagagaaagaaagaaaagatatAGATGACGTATCGGCCAGTGGCGTCTCGGAAACTCGTAGCTGCTCTTAGGAGTGACCTTTTCTAGAGGGAAATGTTGTTTCTCACTCCGTCCGAACCAAACGACAGGAAGCTTTGAAACACACGGCCAACCCCGGTCACCCCCTCTTTGGCATTGTTGAGTCTAAAGAGCTGCTCGCTTTCTCCGCAAGAAAAATAATCTGTCAGGGAGAGATTGCAATACAGTCAACAGGCATGTTTGGGTGGCTGGACTaagaaaggaaagaaagaatGTTTGGAAGAAAGAGAAAATAATCGTCTGGGTTTTGGAGAAAAATAAAGATTTCGAGGGAGGgaagacagacacaaacagaaaTAGAAAAGTTTGATGGTTTCTCACTCAGCCTTTCTCCTTTCGCTGGAGATTTGAGGTAGAGCACATCGTTATTGATAAAGTGTCTTGGCTGTGATCCATGGGAACTGATCCAgcgtgctgtgtgtctgtggagcTCCCAGCCTGCTTTAGTCTCCTGGGACATCCCTGATACTGTTTCTGGTAGGTCCTGTTCTCCCATCCGTCACCCTCCctcctagctagctacatgactAAGGGACTAAAGGAAAACCTTAAGGAGGAATACTGAAGGAAGTCTGGGGGGAGAGGTGTCCAGCAGCAGGAGAAGCTGCTAAGATTTTCCTTATCCCCACTGGTGATTCACTTTTTTTGCTCCACTCGCTTCAAAAGAGGACTGTCTGAACTTACTCTGAACGCTCCACAAACGGTGATCCTCAAACTGACACACAGACCAAACCAGGGAGGGCTGCAGACGGTCTGGGTAGAAGAAGAGACAGAAACTGTGGAGCAAACCAGAGGAGAACAAGAGAGGCTCCAGAACTCCTCCAGCAGAGCAGCAAAGCTCCCCCAGATCGAGGCATCTTCCTGGGGGtagagatggagacggagagGGGTCATATGTCCGTGAGGAGAGGGGTAAGCTGGAGCCCAGGTGGAGGGAGGAAGCCCCTTCAGAAGGTGCATGGCGGTAACACGGACACCGGCAAAAGAGAAAGTGACGCATCTTCGGAAAGGCGGGACTACAAAGCGATCAAAGGACAGGTGACATCAACCTCCACCAATCAGCTGACTCGGAAAACCAacctgacgcGTAGTGCCAGCCTATCAGAGAAGGAGTTGAAGGAGGCGAGGGTGAGGTCACAGATCATCGCGGCCCAGCTGACCGTCCCGTCTGGCTGCTCCAACTCCCGCGGAGTCCAGCTCTTCAACCGCCGCAAGCAGAGGGTCGACGCCTTCACGCTAGAGAGCTGCGGGGAAAGAacgagaggagtggagagagacggagacaacAGGAACAACAACCTGACATGGGAAGGTGAGAGGGAGGGTCCTagtggagggacagagacagacagacaactgaACTGGAAGAAGGGCAGCGGGACAAAACCACCACTCTGGTCGCCACCTTTTGGAAGTGAGGtcacaggaagtgacatcatggAGGACCCAGGTGACGAGCACATCTACGAGGAAGTGGACGTGATACAAGAGAGACACTTCCAGCCAGTGaacgagagagaagaggaggaggaagagaggagtggagagagagaaagagaggagatatACGAGGATATTGAGGGTGAAGTGAAGGATGAGATTATATCAGTAAATGACAACAACACTGGTCCAGTCAGAGAGGAAGTGGGGATGAATAGGGGGTCATACACATACCCCACAGCTCCCCCTGAGAGCCGGCGTAATGGCTTCCACAGCACCCAGGGCTCTGCTGGAGAGATCCAAAATGGCGGGCGAGTTTCTATGTCCCTGTCCAGACAGGCCCCCACCATCGTCAACCGGACAGCCAGACCCTTCTTCTCCCCACCCACCGTACAGCTTAAGTCCCCAGAGGCCAGGAGTCCTGTCATGGATAACAACATACCTCCAGCTCCCTCCTATCctacctccactcctccctcagcCCCCTCCtactccactccccctctccctgctttCACTGCCACTCGCCCTGTCGCCTTCTCCCCTCCGTCTTGCCCTGTCGCCTTCTCCCCTCCGTCTTGCCCTGtcaccttctcccctcctccccctctttcctcatgccccatgtctcctctccctgccttccccatccatcctcctcctccctcccagtctctctccagtcctcctccCAAGTCTACCGTCATGTTCCCTAGGTCTACACCCGTCCCCCAGTACAACCCTGCTCCTACAGCTGCCCCAGTGTCCCAGTATCTACCCCCCAACCCTCTTGTCACCCAATACATCCCTCCTCCAACCTCCCCCAGACCCAACACCTTTGTCCCCTTCACCCCTCAGCCTATTGGTCAACAGAACCAGCAGCAGCCAATCAAAACGGGCATTCTGGAGAAAGGGGCGGCGGCCATCAGACGATCGTCAACAGCCAGGAAGTCCATGTTCACCTTTAAGGAGAAGCCTGTCATGGCACCCAACCCTGaactcctctctctggtccaggGGAACGATGATAGGAAGAAGCACGGCCTCCGCTCCGTTCCCGACTCAGCCCCAGAGGAGGAGCTGCTGGCTCTGGGGGCCGAGGCCTCTAACTTCTTAGCCAAGGAGGAGGTGAAGGCGGAGGCTGCCAACGTGCCGGAGTGGTCCTCCTGTCTCAAGAGCTCCAGAACCAGGGAACCCAGGGAGCAGCACCAGCCAGAGCAGACCCTGACCAACGCATCAGGGAAGGGGGCCGAGCTGTTCGCTAAGCGCCAGTCGAGGATGGAGAAGTACGTAGTGGAGAAACATAATGTGTCCGGTGGTGGAGGTGGCCAGATGAGGTCTCCATCTCCCACCGCATCTCTGCCGCCGTCTTGGATCTATCCATCTAATATGCCTGGCCGGGTCAAAGCTATTGCTAACAACACTGACCTCAGCGCCAGGCTGACACGGACCCTCCAGACCCCTCAGCCTGGGAACAGGAGGCCCAGCCAGCAGGCTTCAACCCCAGCCCCGGTCCTTGCAGAACCACCCCTAGAGTACGGCTGCACCAAGATAGAGATGGACCTCTCCAGGCACCAGCCCTACCAGCTCAACTCCTCCCTGTTCATCTTCAACCCAGTCCAGGACTCTGCCAGCACCGTGCTGAGCGCTCTGCCCCGAGTGGCCCCTCCACCACCCAAACCCCTGATCTCATCTGAGGCCTACTCCAGGCAGGCCTACCTGCCCTCCTCCAACCCTCAGTCACACAAGTACAACAGCCTGCCTCGCTTCAGGCCTACCATGTCCCCGTCACTTCAGCCCCCATCAGGAGGAATTAGAGGTGGGGATAATTATCCTCCACAGCACGGGGGGACTCCACAGCTGAGGGACCCCAGGatcacctctcctgtctctgcCTTCTCTCCGGAGAGAGTGGCCTCTCCTCGGTCGAGCGTCCAGGCACCCAGACCCACCTTCTCTGCCAAGAGGGCAGGGATCGAACCCCAGATGAGGAAGGAGTCCCCTCcgacccccaccaccacccccaccaggaCACCGCAGTTCACCCGTCGGTTCAGCAGCCCGGAGGGACCCCCCACTTCCAGGCCCCTCCACCAGGCGACAGCCACCTCCCCTGCATCCCCACCGTGGGAGACGAGGTGCATGTCACCCACGGTGGTCAACCAAACCACCAAACCCTTCTCCACAGCCTCTTTATCCAGGCCTAAACCATCCACTACCACCTCACCTATATCGTCTGTACCTCCCTGGGGGTCCCGCTGTCAATCCCCTAACATCAACCAGACAACCAAGCCTTTCTCCACCACCATCTCCAACTCTTCCTCTTCCAGACCCTCTCACCAAGGCaccatcacctctcctctctccccctcacccctatCCCCTCCCTGGGGTTCCAGATGCCAGTCTCCCATCGTCAGCCCCAACAACTCCAAGGCAAACCATCGCCTGTTAGCGAAGAACATCATCAACGCCGCCAAACGTAAAAACAGCCCGTCCCCAGGTGCTCTGAGCGGCCACAACCTCCCAATCTCCCCGCTAGGTGACAACACCACCCACCAGCACCACCAGGGCTACGACCACCAGCACCACTACAGCAGCTCCAAACCCCCCTTCAGCCCCTACCAGCCCAGGGCCATGGGGTGCCAGTCTCCACCCTTCGCCAGCCCTCCTCCCACCCCTACAGGGGTGATCCGGTCCCCAGTAAGGCTCTACAACACCAGGTCCCTCACTGACTCGGATGCTTCGGTGGAGTCGGAGGACTCTGGGCTGAGGTCTCCAGGACTGCAGCGTACCCACAACACCTGTCCCCGGGGCTGGGGCGGCAGCCTGAGGGTGAAGAGGGGTAGTGTTGGCACCGACCTATAGGGGGAGCCGGGGAGAGAGGGTCAAGAGAACGGACCACTGAGCTTACCCAATAAGAGAAGAAGAAAACCCAGAGAGGACATTGATACGGGGACTGGTGGGTTTTGGGTAATTTTTTATTTCATTGATGTATAGGAGCATCTAAGATGGAGGGCTCAGAGCTTGCCTCAGGTGAGATATGGAAAGGACTTTTAAAGGAACTGATCTTGTGTGTTTGTTGCTTTGGAGCCTCCAGGAGTAAGGGAAAATAATGGTGACCACACAGTAAAGAACCTGATGCCCTTACAACGCAGCTGGGACATAGAAGCAACCTGTCTGGTGATTCTAAAGTCAACTAAAACCCACTGATTTGGCTGGCAGGCTATAGAGTCCAGAACCATCAAGCTCAGAGCTAGCTCAACAGTGGGATTACTGAGAGGAGATAGAAGGGACAATTCACTGTTGCCTCTGCCTCTCATTCTTACGTTTTTTAAAAATACTTTATACATTTATTTCACAAAAAAAAAGGAAATGTAAGTAATTCTAAAATCCAAAGCGACCTGTCTACAATTTTATATTTGGACCTTGTCTTTGAAAAAACGAAATGTATTTTATTCAGGAATTGCTGAAATGTAAAACTAGCTTACTTGCATTTGACTACGACAAAAGTTCCATTGAAAAATACAATTATTACAGTAGCTTACATATGTTTACTCTAAATAATAGTTTATTCTAAATCTAAGGGCTAgaagaaaaataccaaagataATATCTGGAATGATGTTTTCAAAACAGTGTTACACTTTTCATCCCCCACATAAGACATTAATGATGTGAGGGCGTAGATAGGCCCTTTGCAGTTAttccgtatatatatatatatatatatatatatatttat

Function

GO: NA

KEGG:

id description
K21112 SYNPO; synaptopodin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2568455 lncRNA downstream 240 5530900 ~ 5532619 (-) True G2246033
TU2568461 lncRNA downstream 29111 5503415 ~ 5503748 (-) True G2246038
TU2568453 lncRNA downstream 40685 5489087 ~ 5492174 (-) False LOC110504358
TU2568454 lncRNA downstream 41777 5489087 ~ 5491082 (-) True LOC110504358
TU2568376 lncRNA downstream 50717 5481918 ~ 5482142 (-) True G2245962
TU2568520 lncRNA upstream 8579 5613359 ~ 5613570 (-) True G2246091
TU2568530 lncRNA upstream 24851 5629631 ~ 5629865 (-) True G2246100
TU2568534 lncRNA upstream 28713 5633493 ~ 5633739 (-) True G2246104
TU2568767 lncRNA upstream 33215 5637995 ~ 5638273 (-) True G2246247
TU2568800 lncRNA upstream 93631 5698411 ~ 5698624 (-) True G2246274
XM_036969870.1 mRNA downstream 6067 5488729 ~ 5526792 (-) False LOC110504358
XM_036969869.1 mRNA downstream 6074 5488729 ~ 5526785 (-) False LOC110504358
XM_036969659.1 mRNA downstream 744539 4787439 ~ 4788320 (-) True LOC118945992
XM_021583225.2 mRNA downstream 938554 4589433 ~ 4594305 (-) False LOC110504469
XM_036969689.1 mRNA upstream 102638 5707418 ~ 5731006 (-) False LOC110504359
XM_036969690.1 mRNA upstream 102638 5707418 ~ 5731006 (-) False LOC110504359
XM_036969691.1 mRNA upstream 102638 5707418 ~ 5731006 (-) False LOC110504359
XR_005041139.1 mRNA upstream 102638 5707418 ~ 5731006 (-) False LOC110504359
XM_036969692.1 mRNA upstream 108991 5713771 ~ 5731006 (-) False LOC110504359
TU2567370 other downstream 910869 4535841 ~ 4621990 (-) True G2245152
TU2566964 other downstream 1419858 4111702 ~ 4113001 (-) False G2244811
TU2566965 other downstream 1419858 4111702 ~ 4113001 (-) False G2244811
TU2566966 other downstream 1419858 4111702 ~ 4113001 (-) True G2244811
TU2566928 other downstream 1432187 4098767 ~ 4100672 (-) True higd2a
TU2568854 other upstream 243339 5848119 ~ 5852202 (-) False G2246314
TU2568862 other upstream 243339 5848119 ~ 5852599 (-) True G2246314
TU2570139 other upstream 1265807 6870587 ~ 6871100 (-) True G2247416
TU2570306 other upstream 1333843 6938623 ~ 7024539 (-) False G2247565
TU2570303 other upstream 1343340 6948120 ~ 7024539 (-) True G2247565

Expression Profile