RNA id: XR_005041150.1


Basic Information

Item Value
RNA id XR_005041150.1
length 1490
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC110504483
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 7835243 ~ 7849870 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTCACTGCGTGGAGAGATCACACTGAATAGATGATTAACCAGGTCCCAGGGGAAGGAGAAGGAGCGGACAGGTCCCTCTCACTTTCACGATGCGGGGCATGCAGGAGAGTATGTGGGTCCTACCTCTGGTTCTACTGGGGCTGTTAAAGCCCTGGGCTGCAGGCTACTCACTCAGTCAGGTGTGTGACCCATCTAAAGATGGCACGATCTATAACTACAAAGCTAAGACACTGAATGGGAGTCGTTCAGTCTCCCTCAGTGAGTACATGGGGAAGACCGTCCTCTTCGTCAACGTAGCCACTTACTGAGGACTCACCTTCCAGTACCTGGAGTTGAATGCACTACACGAGGAGATGAAGGATTATGGGTTTACCATTCTCGGGTTCCCCTCCAATCAGTTTGGAAAACAGGAGCCAGGAGAAAATCATGAGATTCTGGCCACTCTAAAGCATGTCCGACCAGGAAATGGATTTGTTCCAAACTTCCTGCTATTCCAGAGGGGGGATGTGAACGGAGACACAGAACAAGGAGTCTACACTTTCCTTAAAAACTCCTGCCCGCCAGTAGGGGACAGCTTTGAGAACCCCACCAACAGGCTGTTCTGGGAGCCCCTGAAGATCAACGACATCAAGTGGAACTTTGAGAAGTTCCTGGTCGGACCGGATGGGAAGCCCGTGATGAGGTGGTTCCCCCGGGTCCCAGTGTCTGAGGTTCGGGAGGACATCCTCAAATACATCCGTCAACTCTTCTCCCAGTCCACCCAGCAGAACATTGACTAAGATTTAacgtgccccaaatggcaccctaatcccaagatagtgcactactggaaATTCTCCAAttcaccagggcccacagggctctggtcaaaagtagtgcactatattgggaatatggtgccatttaggatgcggCCTGTGTTATCAGGGCTGGGGTCGATTCCATGTCAATGGAGTAAATTCCTGTATTGAAATTCAGCCTACAGATTTATTAGATTCCCCTTTTAGATGCACGAAAACACAGTGGACTGGTTTCCAGGGTCCAGATTACACCTCTttctggactaaaaagcactttcaatggaAATTCTCCAATGAGTATGCTGTCATTTTATTCCAAGAGTAGGCTGAATCTGGATCAAGGAAACCAATGTCATAAAACACTATTttccccccatccttgtcgaaaACCTCTGACAAGCCATGTATGTGTAGAATAGAACATCATTCAACTGATTCGTAGAAGAAAATGTCAATCAATTCAAATGTATGGCTGGCTGTGGTGGTAGTGGGTAAGGGTCGTAGAGGAGGTGGCATGTTGTATGAAGGTGAGGCTTGAAAACAGAGCGTCTGTGGTGCCAAACCTGAGTTCTAGGGTCCAGGCCAGTCCTTCAGTGCATTCAGGCTGGGCCTGGTAACCCTGGGAGTCATGTTACCTCCTGGTCCTGCCACCTGACTAATTCATGTCAATAAATCACGTCAGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2571313 lncRNA downstream 40650 7794342 ~ 7794593 (-) True G2248407
TU2571258 lncRNA downstream 48789 7785638 ~ 7786454 (-) True G2248354
TU2571294 lncRNA downstream 99632 7735126 ~ 7735611 (-) True G2248388
TU2571008 lncRNA downstream 232931 7601756 ~ 7602312 (-) False G2248143
TU2571007 lncRNA downstream 232931 7601842 ~ 7602312 (-) True G2248143
TU2571347 lncRNA upstream 873 7850743 ~ 7851049 (-) True G2248436
TU2571343 lncRNA upstream 1495 7851365 ~ 7851589 (-) True G2248432
TU2571351 lncRNA upstream 13745 7863615 ~ 7864572 (-) True G2248439
TU2571369 lncRNA upstream 78656 7928526 ~ 7929157 (-) True G2248456
TU2571420 lncRNA upstream 163490 8013360 ~ 8016525 (-) True G2248500
XM_036969850.1 mRNA downstream 109451 7698183 ~ 7725792 (-) True LOC110504480
XM_036969849.1 mRNA downstream 126982 7698183 ~ 7708261 (-) False LOC110504480
XM_021583258.2 mRNA downstream 633743 7127869 ~ 7201500 (-) True LOC110504506
XM_021583259.1 mRNA downstream 696283 7127869 ~ 7138960 (-) False LOC110504506
XM_021583260.2 mRNA downstream 703690 7127869 ~ 7131553 (-) False LOC110504506
XM_036970504.1 mRNA upstream 8255 7858125 ~ 7871074 (-) False LOC110504356
XM_036970505.1 mRNA upstream 8255 7858125 ~ 7871074 (-) False LOC110504356
XM_036970506.1 mRNA upstream 8255 7858125 ~ 7871099 (-) True LOC110504356
XM_036970507.1 mRNA upstream 22024 7871894 ~ 7889136 (-) False LOC110504484
XM_036970508.1 mRNA upstream 22024 7871894 ~ 7889136 (-) False LOC110504484
TU2570603 other downstream 579303 7255344 ~ 7255940 (-) True G2247813
TU2570306 other downstream 810704 6938623 ~ 7024539 (-) False G2247565
TU2570303 other downstream 810704 6948120 ~ 7024539 (-) True G2247565
TU2570139 other downstream 964143 6870587 ~ 6871100 (-) True G2247416
TU2568862 other downstream 1982644 5848119 ~ 5852599 (-) True G2246314
TU2571450 other upstream 191006 8040876 ~ 8041480 (-) True G2248522
TU2571633 other upstream 304041 8153911 ~ 8157533 (-) False G2248668
TU2571635 other upstream 304041 8153911 ~ 8157533 (-) False G2248668
TU2572664 other upstream 1296921 9146791 ~ 9148302 (-) True c1qtnf2
TU2572681 other upstream 1300018 9149888 ~ 9150141 (-) True G2249506

Expression Profile