RNA id: XM_021583509.2



Basic Information


Item Value
RNA id XM_021583509.2
length 1259
RNA type mRNA
GC content 0.54
exon number 7
gene id LOC110504719
representative False

Chromosome Information


Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 18573527 ~ 18597168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agagagagagagagagagagagagagagagagacagagagagcgacagagagagagacagagcgagagagagagagagagagagagagagagagagagagagagtgtgtgtggagggagagaTTAGCCTACTGCTGCTGTGACTGCTGCTCTACCAGAAACAGGGTGACAGCTAGGAAGATAATGCCCCAGAATGTGGTCCTGGATGGGCCAGCCCCTTGGGGCTTCAGGCTCAATGGAGGGAAGGACTTCAACCAGCCCCTGACCATCACCAGGGTGACGCCTGGCAGCAAAGCCTCGCTGGCCAACCTGTGCCCCGGTGACATCATCCTGGCCATAGAGGGTGTGAGTACAGAGTGCATGACTCACAGCGAGGCCCAGAACAAGATCAAAGACCCTGCCTCCCGCCTCGGCCTCAAGATTGAGAGGCCTGAGACCAAAATGTGGTCCCCCCAAGTCACAGAGGATGGGAAAGCAAACCCATTCAAGCTCAATTTAGAGGCAGAACAACAAGAGTTGAAACCTATCGGTACAGGTCACAACCGACGGGCCCAGCCCTTCATGGCTGCGGCCACCATAGACAACGGACGCCAGGTGGTGAGTTCCTCCTACAACACTCCCATAGGCCTCTACTCCTCAGGCAACATCCAGGACGCCCTGCACGGACAGCTCCCAGGCCTTGTTCACGATAAGCATCAGGGTGGTAAGACACTGTCCTCCATTAAGGAGTCTCATGTGtaccggatgctccaggatgacCAGGATAGGCCACATGAACCACGTCAGTCAGGCTCCTTTAAGGCTCTGCAGGAACACGTGGAGACTGATGGAGCAAAGCCGTTGATTACTAGAAGTGTAAGAGCTCCGGTGACAAAGCATCCTACACCTGCGGGATCGCTACAGAAACTACCCCTCTGTGACAAGTGTGGAAACGGCATAGTAGGCACAGTGGTGAAGGCCAGAGAAAAGTTCCGCCACCCTGGATGTTTCGTGTGCTCCGACTGCAAAGTCAACCTGAAGCAGAGGGGCTACGTCTTTGTGGAGGGGCAGCTGTACTGCGAGACCCACGCCCGCGCCCGGACGATACCTCCAGAGGGACACGATGTCATCACCGTTTACCCCACGGCTTGAGACCAGTGGACTGGGAAATGCACAGACCTGTCCAAATGGAGCAAGAACTGTAATTTGCCACTCCCCTTCTCATACAGAGTATTTCAGGACAAAATACatgatatatgatatatatatatatatatatat

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU2583385 lncRNA upstream 3251 18567470 ~ 18570276 (+) True sorbs2b
TU2583445 lncRNA upstream 19409 18553388 ~ 18554118 (+) True G2258379
TU2583430 lncRNA upstream 48494 18523667 ~ 18525033 (+) True G2258364
TU2583420 lncRNA upstream 65966 18505835 ~ 18507561 (+) True G2258355
TU2583367 lncRNA upstream 100724 18472603 ~ 18472803 (+) True G2258324
TU2583402 lncRNA downstream 77 18596889 ~ 18597162 (+) True LOC110504719
TU2583469 lncRNA downstream 6141 18602953 ~ 18603352 (+) True LOC110504723
TU2583505 lncRNA downstream 60622 18657434 ~ 18657726 (+) True G2258436
TU2583522 lncRNA downstream 89781 18686593 ~ 18689652 (+) True G2258447
TU2583569 lncRNA downstream 166727 18763539 ~ 18812060 (+) True G2258479
XM_036970460.1 mRNA upstream 3243 18487763 ~ 18570284 (+) False sorbs2b
XM_036970455.1 mRNA upstream 3243 18487764 ~ 18570284 (+) False sorbs2b
XM_036970457.1 mRNA upstream 3243 18487764 ~ 18570284 (+) False sorbs2b
XM_036970458.1 mRNA upstream 3243 18487764 ~ 18570284 (+) False sorbs2b
XM_036970459.1 mRNA upstream 3243 18487764 ~ 18570284 (+) False sorbs2b
XM_021583514.2 mRNA downstream 4035 18600847 ~ 18605164 (+) False LOC110504723
XM_021583515.2 mRNA downstream 4035 18600847 ~ 18605164 (+) False LOC110504723
XM_021583516.2 mRNA downstream 4035 18600847 ~ 18605164 (+) False LOC110504723
XM_021583517.2 mRNA downstream 4218 18601030 ~ 18605164 (+) False LOC110504723
XM_021583521.2 mRNA downstream 130617 18727429 ~ 18752805 (+) False enpp6
TU2581940 other upstream 562732 17996747 ~ 18010795 (+) True micu3b
TU2581622 other upstream 1127597 17445566 ~ 17445930 (+) True G2256867
TU2581537 other upstream 1223182 17291119 ~ 17350345 (+) True G2256788
TU2581287 other upstream 1739683 16828805 ~ 16833844 (+) True G2256591
TU2581254 other upstream 1795502 16776894 ~ 16778025 (+) True G2256563
TU2586203 other downstream 1990879 20587691 ~ 20663813 (+) True LOC110504399
TU2586351 other downstream 2349921 20946733 ~ 20947525 (+) True G2261028
TU2586702 other downstream 2845844 21442656 ~ 21443007 (+) True G2261334
TU2586787 other downstream 3155003 21751815 ~ 21772260 (+) True G2261414
TU2586776 other downstream 3351012 21947824 ~ 21953060 (+) False LOC110504779

Expression Profile


XM_021583509.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_021583509.2 Expression in each Bioproject

Bar chart with 15 bars.
XM_021583509.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.