RNA id: XM_036970021.1


Basic Information

Item Value
RNA id XM_036970021.1
length 1426
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110504823
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25065488 ~ 25080226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTGCTAAAATAACCCAGTGAGGTAAGCACAGAGGGATCACTGGTATACAAACTGTTGCCTCGCAGATCAGAAGCATCAGAGTGGGATAGGGAAGCATCCCGGATTCAGGAGGATAAACCACACAGCGATATACTAATCTCATATCACTTCACCTTTACTGCTGAATCTGTGAGAGGAGACAGGCGAGACAGAGGAAGATAATGCAATCACCTTATGATGACCTGGCCAAGCAGAGGATCCAGCAGTCCAGGGCTTTGTGTTCAGAGGCCAGGCGAGAAGGTCTGAACTTGGGGAAGAAGATCAGCATACCCAAGGATGTGATGATGGAAGAGTTGAACCTTCAGTCCAACCGTGGCTCCCGCATGTTCCAGGAGAGACTGAAGAGGGTGGAGAGGTTCACTCTGGAGAACCAAGTCAACGACTTATACAGCAatGGCCTTCCAGAGCCCATGCCTTCCCAGACAGTAGAAGAGCCCCAGGGGGGGAAGGAGAACCAGGCATATATGATGCCTGGCAAACACAGCCTGATCACCACCCTACAGAAAACTGTGGCCAAGAAGGGCAGCCCCAATGTCATCGCCCCAGGCTACGGGAGCCCCCTGAAGGAGATCCCCCGTGAGAAGTTCAACCTGACAACCAGGTCCTACTGTTCCCCCTGGAGGGAAGCCCTGGGTGACAGTGACAGGCTCCTGTTGACTCTCAGCACCCAGCTCCCACGGGGGGCCACACTACAGCCGGCCAACTACAGGTGCTTCAACAGagCGGCCACACCTTTTGGAGGCCCACAGCAGCAGAGTAAGAGGGTGATCCCAGTGATGGGGTTCGAGCTGTTGGACTCACAGCACCTCCCTGGTACGACCCTGGACCGCATGTGTAAACGGCCCAACTTCAACAGAGCACCACGGGGATGGGGTCACGACTACTCCCCTGAATCCACCGACCTGTGATTGGCCCACTGCTCACCTACGTCCTTCAAACTTCTGGTGACATCACAGGCTAAAAGACTGAAGCATTAATCTGCTCTTATTACCCATCCTCATCCCTCTGGATTCAAAGATGACCTATCCGGATGAGGAAGAAGTTGCCTCAAAATACAGATATTTTCATCTGTTTAATAGTTAGGATAAGagtagatctgtggttaggggcaACTTGTAACTCGAGTGATCCCTGTTATTGAGTGACTCCTCCTTTCTTTCATCTTAATGCCCTCTTACCCATCCTCACTCCCCCATTCACCTCACCACTTGCCTCCCTTCCCATCCCCTGTTcactcatccctccctctttcagaCCCCCCCTGTTTATAAAGGACTGACAGTGTGATCTTGATTAATGTAAATGATAGAGTACTTGTTTTAATGGCATAAGCGGACAAGATACGTGAAACATTACAATAATAAAATTGTATCAAAGTGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591168 lncRNA upstream 91 25064471 ~ 25065397 (+) True G2265342
TU2591160 lncRNA upstream 3411 25061865 ~ 25062077 (+) True G2265340
TU2591143 lncRNA upstream 22646 25037312 ~ 25042842 (+) True G2265325
TU2591103 lncRNA upstream 71651 24990460 ~ 24993837 (+) True G2265295
TU2591070 lncRNA upstream 93118 24972150 ~ 24972370 (+) True G2265263
TU2591192 lncRNA downstream 15731 25095957 ~ 25159112 (+) False LOC110504826
TU2591205 lncRNA downstream 27556 25107782 ~ 25108470 (+) True G2265371
TU2591184 lncRNA downstream 98820 25179046 ~ 25181247 (+) False LOC110504826
TU2591185 lncRNA downstream 98820 25179046 ~ 25181247 (+) False LOC110504826
TU2591186 lncRNA downstream 98820 25179046 ~ 25181247 (+) True LOC110504826
XM_036970453.1 mRNA upstream 53835 25004273 ~ 25011653 (+) False LOC110504822
XM_021583649.2 mRNA upstream 53835 25004288 ~ 25011653 (+) True LOC110504822
XM_021583644.2 mRNA upstream 209155 24853033 ~ 24856333 (+) False LOC110504821
XR_002470644.2 mRNA upstream 1223070 23836894 ~ 23842418 (+) False LOC110504805
XM_021583610.2 mRNA upstream 1363700 23694188 ~ 23701788 (+) True LOC110504797
XM_036969697.1 mRNA downstream 11406 25091632 ~ 25181408 (+) False LOC110504826
XM_036969696.1 mRNA downstream 15643 25095869 ~ 25181408 (+) False LOC110504826
XR_005041141.1 mRNA downstream 15643 25095869 ~ 25181408 (+) False LOC110504826
XM_036969698.1 mRNA downstream 15645 25095871 ~ 25181408 (+) False LOC110504826
NM_001124443.1 mRNA downstream 102996 25183222 ~ 25191478 (+) True LOC100136157
TU2589999 other upstream 874453 24190750 ~ 24191035 (+) True G2264345
TU2589998 other upstream 875136 24190073 ~ 24190352 (+) True G2264344
TU2589847 other upstream 1184456 23880781 ~ 23881032 (+) True G2264210
TU2589730 other upstream 1201515 23855609 ~ 23863973 (+) False G2264113
TU2589732 other upstream 1354402 23697688 ~ 23711086 (+) True G2264115
TU2591263 other downstream 135425 25215651 ~ 25244329 (+) True G2265425
TU2591464 other downstream 501767 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591497 other downstream 544919 25625145 ~ 25626856 (+) False G2265625
TU2591501 other downstream 544919 25625145 ~ 25626856 (+) True G2265625
TU2591580 other downstream 743814 25824040 ~ 25825540 (+) True LOC110504852

Expression Profile