RNA id: TU2591192


Basic Information

Item Value
RNA id TU2591192
length 419
lncRNA type sense_over
GC content 0.54
exon number 3
gene id LOC110504826
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25091632 ~ 25181408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGACCGGAGCCGCTGGTAAAGCAAGACGTAAGCACCGGGTGAGCTTGGGTTGAATCCAAACATTCATTCTACCAGATCGTCTCTAGGCGTTCACTCGGACCTTGAAGGTGAatccagagggaagagagaagaccGTTACAGAAGGAGGCCGGTTTGCGTGTTAGTCTGCTACCTGTTGGGAGCCGTTGGAGGACATTTGGTGGACATCTTGTTTTGGGAAGGTCATAACCACAAACCATCCAGGAGAATGTTGCTATTGGGATGACCTTTGTGACCTCACCATTGCCCGCCCCCGTAAAGATCAACCACCAATCAGGAACCCTGAGGGATGTGGTTGGCTGGTTCCAGTGATGGACAGGTGACCAGCCAGACCTCTAGCTGCCCTCTCCTGCTCtgattccccctctccttccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591175 lncRNA upstream 19457 25075495 ~ 25076500 (+) True G2265349
TU2591174 lncRNA upstream 19871 25072714 ~ 25076086 (+) True G2265348
TU2591168 lncRNA upstream 30560 25064471 ~ 25065397 (+) True G2265342
TU2591160 lncRNA upstream 33880 25061865 ~ 25062077 (+) True G2265340
TU2591143 lncRNA upstream 53115 25037312 ~ 25042842 (+) True G2265325
TU2591184 lncRNA downstream 19934 25179046 ~ 25181247 (+) False LOC110504826
TU2591185 lncRNA downstream 19934 25179046 ~ 25181247 (+) False LOC110504826
TU2591186 lncRNA downstream 19934 25179046 ~ 25181247 (+) True LOC110504826
TU2591269 lncRNA downstream 35722 25194834 ~ 25195072 (+) True G2265431
TU2591272 lncRNA downstream 36655 25195767 ~ 25196074 (+) True G2265433
XM_036970021.1 mRNA upstream 15731 25065488 ~ 25080226 (+) False LOC110504823
XM_036970022.1 mRNA upstream 15731 25065499 ~ 25080226 (+) False LOC110504823
XM_036970023.1 mRNA upstream 15731 25065499 ~ 25080226 (+) False LOC110504823
XM_036970024.1 mRNA upstream 15731 25065499 ~ 25080226 (+) True LOC110504823
XM_036970453.1 mRNA upstream 84304 25004273 ~ 25011653 (+) False LOC110504822
NM_001124443.1 mRNA downstream 24110 25183222 ~ 25191478 (+) True LOC100136157
XM_036970479.1 mRNA downstream 42967 25202079 ~ 25215380 (+) True hmgxb3
XM_036970071.1 mRNA downstream 145166 25304278 ~ 25308642 (+) True LOC110504297
XM_036970123.1 mRNA downstream 358821 25517933 ~ 25536990 (+) False LOC110504832
XM_036970124.1 mRNA downstream 358821 25517933 ~ 25536990 (+) True LOC110504832
TU2589999 other upstream 904922 24190750 ~ 24191035 (+) True G2264345
TU2589998 other upstream 905605 24190073 ~ 24190352 (+) True G2264344
TU2589847 other upstream 1214925 23880781 ~ 23881032 (+) True G2264210
TU2589730 other upstream 1231984 23855609 ~ 23863973 (+) False G2264113
TU2589732 other upstream 1384871 23697688 ~ 23711086 (+) True G2264115
TU2591263 other downstream 56539 25215651 ~ 25244329 (+) True G2265425
TU2591464 other downstream 422881 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591497 other downstream 466033 25625145 ~ 25626856 (+) False G2265625
TU2591501 other downstream 466033 25625145 ~ 25626856 (+) True G2265625
TU2591580 other downstream 664928 25824040 ~ 25825540 (+) True LOC110504852

Expression Profile