RNA id: XM_036970479.1


Basic Information

Item Value
RNA id XM_036970479.1
length 5222
RNA type mRNA
GC content 0.53
exon number 20
gene id hmgxb3
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25202079 ~ 25215380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACAGCGCCATGTTTGCTGCAAGACTAGGACAAATCGAGTGCTTTGAGGCCCTTAGATTAAAAACGAAGTAGCCCAGTTTAAGGCAAAATATAGAGAAATATACTTATTCTAGGCAATGTGAGCGATGCAGTTCAGTTTCAGCGTCGCTTGAAGCCATCTCAGATCTAGTTTGAGAGTTCTTCAGGGCAACAGAGGCTCTCCTCGGTTCCCTTTAGCCATGGAGACCATAGAGGTGTATGAGGAGACTGATCGGAGGATGACGGAGGAGGTGGAGAGCTGCTACACCCTGATGGAGGTCACCTCTcccaagaagaggaagaagaacaaGGCTCAGCAGGGGGAGATCATGGAGAAACCCAAGAAACCCAGATCAGCCTACCTGCTGTACTACTTTGATGTGCATCAGACCATGCAGCAGGAGTTCCCCAGcctgccccagtctgagatcaaCAAGAGGATCAGTGTGAGCTGGAAGAGGCTCAATGTGGCAGACAAGGGCTACTACCTGGAGAAGGCCAAGCTGGAGAAGGAAGGGACGGACACGTCATCTATGGGCCCTTCCCAGGAGCTCCCAGGCTTCCGTAGGATCCTCCCCAGGGCAAACTACGTCCTCCTGCCCAAGGGGGCCATGTCAGACGACAGGACAGGCTCCCAGCTGGAGGTGTGTATGGAGGGGCTGGACTCTCCCGTGGGGGAAGGGGTGATGCCCTCCCTGTCCCTTGGTTCCCCCCAGTACCCTCCCTTGGTGCTGGGCTGCGAGGTGGAGCTGTCGCAGCAGTGCATCGCCATCGAGGGCCTGACAGACGAAAAGGCTGTGACCCTGACACACTCCGGGGCCCTGCAGGGGGTCCTCTCCTCATCGTATCACTCCTCTTCCTCAGTCTCTGCCGCCCACGAATCCCACAATGCACCTCACCTGGCGTCAGCCGGTCTGCTGCTCAAGGAGGAGGAGCCCAGGGTGGTGGGCGGGGGCTATAGTGTCATTGGAATGGCGACTGACGGGAGGCGTGTGGGCGGGACGTCGGTGCAGCACGTGAAAACAGAGCTGGTCACCATCATACCCAATCAGGATCTGATGGAGCACAGGACGTTGCCAGGAGCCAGCTCTGTAGCCTCTGTTGTCATGGTACCTGTAGGAGCTAGGGTGATACAGGACACTAATCCCTCATACAAACTGTCGAATAAATACACCAGAAGAGGCCGGGGCAGCTGTCAGACAGCGGGCTGCTCCTTTGTCTACGTGACCCGTCACAAACCACCCTTCTGTCCTGATTGTGGCAACCACCTGGGGGGCAAGTGGGTGCCCGCTGCGGTAAAGACTCCAGGTGCTGCTGCTTCATTCAAGACTTATGCCCAGAAACCACCCAAAAACCCTGGGTACCCCCCTAAGACTGGTGTGCCTCCCTCTGATGATCAGAACAGTAAGGTGtctggatggaggaagggagggagaggaccgCGGGAGCCCAGAGGACAAGGGCAGCAGCGTGCAGTTACACCAGGACCACCactagagggaggtagagacaacagccAGGGAGTCATACAGCCTGCTCCAGCGATGTCAGGGACACAGACAACTACTATGATAGCTTTGGTTGGAACACCTGTGACTGGTGCCAGGGTCAAAGTACAGGAAAGGAGCAGTGTGGTTGGTCAAAAGCGACCTGTGAGAGCCATCCTCCCAGCCCCATTCAACACAGGCCGGGCCTTAGTCCAGTGGATTACTGTCCCTCCTCATAAAGGCAAAGTTGAGGAGACCAACTGCAGCAAATCAACCACAGAGCTCAGTGAGATGATCGCAGGTTTGAAGCCTAACACTCTGAAACAGCTCGGCCAGATCGTGACAACAACACCTCTGGAACAGACTCTCCCTACTCCTGTGGACAGAAGCCAGTATATTGTAACTGATAAAGTAGGGAAGATCCTATCAGTGGTTCCTCTCAAACAGAACTCTACCTCCACACTGgacctGGGTCTGTCTACGGCGCGGGGCAGGGGTCGCTGTAAGAACCCGTCATGTGGCTATGTTTATAAGAACAGACACAAGCCTGCGGAGTGCCCCTGCTGTGGCTTGGAGCTGTCCAGGAAGAACGCCAAGGGCTCCAAGGCACAGggTGGTTCAGTAGCTCTGTTAGACCCGTACCGGACCCTGTCCCCAGCCCAGAGGGAGCTTCAGCGCCAGTCCACCCTGCAGCTGCTGCGCCAGGCCCTGCAGATCTCTGAGAGTGAGGCTGAGCTCCATGACACCCTGGCCCTCATCCAGGAACTCAACTCTACCCAGGTGGTCCTCACCACGACCACCACCCAGGCCGGGGACCAGGTGTTAGGGGAAGGCGGGGGCCTGGGGGAGGTGCAGGTCCAGTCAGGCTGGCCGCGGTTCTATGAGTCTGCAGCCACACACTGTGCTCTGTGTCACTACCCGCTATTCAAGGGAGGACAGAGTTCTTTAGCAGGGCAGGAGGACTGCTGGCTGTTGActgactctctgatccagacaGCCTCTCTCCAGCTGAAGGTGTGTCTCAACCCCCAGTGTCTGGCCCTGCACAGCTTCACCGACCTCCACCCAGGTCTGTTCAATGTTGGCAACAGGTTGCTGGTGAGTCTGGACCTGTTCTTTAAGATCCGGAGTCAGATCAGACTGGGCCGGCATCCTAACCAGATAGTCAGGACCATCCTGGACCACATCCACAACCACGCTGTCCACACTCTGAGTCCTGAGGAGTTGGCCCATGTCCAGGAGCTGCTGGTTAGTGGCTACTGGGCCTTTGAGTGTCTGACCGTAAGGGACTACAACGACATGATCTGTGGTGTGTGTGGCATCGCCCCCAAGATGGAGATCGCCCAGCGGTACACACACAACGTGCTGGAGCTTAGGAATGTGGAgTTTACGTGGCCAGACTTCGGGGCTCCAGACAAGGTGCATGTGGATGACTTCTGGCTGACCATGGAGAGTGAGGCCATCGAGCAGGCAGCGTTCCCCTGCAGCGTCCCCATCACCCGGGTCGACGCCTCCATCATCGCCCCCTTCATCCCACCACTAATGAGGAGCTCCACTGTCATCAACACAGAGAAGGACAAGGCCCTGCTCCTCACACAGCACACAGgtGACCCATCTGTTCTGGTGCGTCTGATCCACGAGGGCCAACTCAGACCGGACCGAATGGATGAGCACAGTGCAGAGGAGCTCAAAGCCATACTGGAATGCTGTGGCGAGATCACTGCACCAGAGAGCAACAAGgatgaGTTGCTGGTCTCTCTGATCTCCCTGTGTACGTGTGTTCAGAACGGCCTCTCCACGGCCCCCCAGCCCCCTCCACACCTCACAGCAGGCAAGCTGTCCAAGATCTGCCCCCATCAGGTGGTGTGTGGTTCCAAGTACCTGGTGAAGGGTGAGACGGCACGCGACCACGTGGACCTGCTGGTGTCCTCCCGGTATTGGCCTCCCGTCTACGTTACCGACTCTGCCCGCCAGGTGGCGCTGTGTACAGACGTGCAGTACCCTGAGCTGGCCTCCACCATGTGGGGCAGGAACCAGGGCTGCTTCTCTGATCCCATGGACAAACCAGAGtttGTGTCGTGTGCTGAGCTACAGGACCAGCCTTACTGTGCTGACCTGTCCTCCGTGGTGGAGAACCCCCAGGTCCACCCTGTCACCAAGTCCTCTTCCCGCTGGATAGTGCATCCTGCTGGGCCTACAGATGGCCAGGAGCCCCCCTGTCTGGACCACCACTCAATGGGGCTCTGCAATGAGCTGGAACCTTACTGCAGTCTGGTACaagacctggagagagacaacgagaAAGAAGAGGACgaagggaaggaggagaagaaggatggGTTCAAGGTTGAAGCCGAGGTGACAGAAGGGTCAGAGGTCACTGAGGAGGAATGTTCTGAGGGTTTGGTGACATCATTGCGGCGGAGACCTTTGGCCTTTGACAACACGGCCTACTACTACCTGTACAACCGTCTGCAGGACTTCCTGTCCAGCCGGGAGGTGGTGGACCAGCAGATCAGCACAGTGCTGAAGGCCTGCCAGCCTGGGGAGGTGGTGATCAGGGATGCCCTCTACAGGCTGGGGGTGGCACAGATCAAcacagaggaaggggaggagggggaaggagacgggggggtggagggagacacTGGGTATGAGGAGGTAGTGGTTCTCTGAGAGTGACAGACTGTGGCTTTTTGGAGACTTATTTTGTGCTGTGACCCAACAAGTAAACAAACCAATATAACTTTCTGACGTTGGGGGATAATGTTTAATATTATGGACATGTGGCCCATATTATTATGAGGTAGTCCTTTTTTTAGAAAGAAGGctatttatatacatatataatatatatggaGATATCTGGTTCAGAAAAGCTAGCGTGTAGTGGGGAGGCTGGTAGTCCTTGAATGTACTGTGCAAAAATATGCTTTGAGTGTTTCCAAAGAAACAGAGGTGTTGCTGCTAACCAGACAGATAGTCTGTAACTTATCAGTCCAGCAGAGACTTTGTTGCTGGTTTGAAATGAAAGAATGGCACTTTGTTTTCTTTGTGAGAGGAGCAGAACCAGTGAAGAGTGTAAAAACGTGACTGTTACTAACTGCTCTCTGCTTTACTTTGACTGAAGGAAAGTTCACACAGTTTTAGAATAGATAACAACGTTTAAAAACATTGTTTATGTTGACTAACTTCATTGTTGGAGTGCATCATGTTCTTTCTAGaagtataataataattatgattaTTTAATAACTGTATTTAATGAGTCCTCGTGCTTTCTCATCCTCAGTAAGACCTTTCACACTGTTCTATGCTATCTTCTGGTACCTCACTCGTTGCCCTTTGGGCTGAAATGTATTCAAGGTAAACAACCTTTCACATCTGCCTCATGGGCTGATGGAATCTGTAGTTCTTGTGGCCTTTGATTGGGTTTTTGACCACGGGAGACTCTTGCCTGAGCTCCTATTGGAGGGGTGGCTCTGAATGTCAGGACTGTTCTATCATCTACTCTCAGCTGCTTGAATGGAATCTAAAGAAGACAATGATTGACTTGATGATGTAACTGTGATGGACATAGTTATTACAGTTTGCGGATGGAACTTGATACCCACTCAAGGGGTATGAAAATATATGGTGACGGTAGACATTTCTGAATAATTTTGCTTAAGGAATTATAAATAAAGCAAATAAAGTATTTCCTAATGTTGAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591262 lncRNA upstream 2465 25199326 ~ 25199614 (+) True G2265424
TU2591270 lncRNA upstream 5548 25196236 ~ 25196531 (+) True G2265432
TU2591272 lncRNA upstream 6005 25195767 ~ 25196074 (+) True G2265433
TU2591269 lncRNA upstream 7007 25194834 ~ 25195072 (+) True G2265431
TU2591184 lncRNA upstream 20832 25179046 ~ 25181247 (+) False LOC110504826
TU2591315 lncRNA downstream 76917 25292297 ~ 25292506 (+) True G2265476
TU2591319 lncRNA downstream 83422 25298802 ~ 25299091 (+) True G2265480
TU2591329 lncRNA downstream 94050 25309430 ~ 25309668 (+) True G2265490
TU2591330 lncRNA downstream 95073 25310453 ~ 25310733 (+) True G2265491
TU2591292 lncRNA downstream 95748 25311128 ~ 25314079 (+) True G2265453
NM_001124443.1 mRNA upstream 10601 25183222 ~ 25191478 (+) True LOC100136157
XM_036969697.1 mRNA upstream 20671 25091632 ~ 25181408 (+) False LOC110504826
XM_036969696.1 mRNA upstream 20671 25095869 ~ 25181408 (+) False LOC110504826
XR_005041141.1 mRNA upstream 20671 25095869 ~ 25181408 (+) False LOC110504826
XM_036969698.1 mRNA upstream 20671 25095871 ~ 25181408 (+) False LOC110504826
XM_036970071.1 mRNA downstream 88898 25304278 ~ 25308642 (+) True LOC110504297
XM_036970123.1 mRNA downstream 302553 25517933 ~ 25536990 (+) False LOC110504832
XM_036970124.1 mRNA downstream 302553 25517933 ~ 25536990 (+) True LOC110504832
XR_005041144.1 mRNA downstream 325596 25540976 ~ 25551549 (+) True LOC118946013
XM_021583687.2 mRNA downstream 336197 25551577 ~ 25576248 (+) False LOC110504839
TU2589999 other upstream 1011044 24190750 ~ 24191035 (+) True G2264345
TU2589998 other upstream 1011727 24190073 ~ 24190352 (+) True G2264344
TU2589847 other upstream 1321047 23880781 ~ 23881032 (+) True G2264210
TU2589730 other upstream 1338106 23855609 ~ 23863973 (+) False G2264113
TU2589732 other upstream 1490993 23697688 ~ 23711086 (+) True G2264115
TU2591263 other downstream 271 25215651 ~ 25244329 (+) True G2265425
TU2591464 other downstream 366613 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591497 other downstream 409765 25625145 ~ 25626856 (+) False G2265625
TU2591501 other downstream 409765 25625145 ~ 25626856 (+) True G2265625
TU2591580 other downstream 608660 25824040 ~ 25825540 (+) True LOC110504852

Expression Profile