RNA id: TU2591463


Basic Information

Item Value
RNA id TU2591463
length 913
lncRNA type read_through
GC content 0.51
exon number 5
gene id si:dkey-74k8.4
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25557578 ~ 25586728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttaagGCTTTGTTTTGCACTGTTTATTTCATTTACTCCAGAGAATAACTTGTACAACTGGATCTGTCATTAGGGAATGTCAACATGGAAGGGAGGGACCAGTAAAACCAGACAACCCAGCTCAATAATTTCCTGCTTTGTGTGCAGGTGACATTTCTCAAGGTTGTGTTGTGCTCCTTGCGTCTGCCGTGTTCTCTAGTTAGTAGACATAGTTGGCTGTGTGCAGGGACTGCATGGAAGCCTGGTCATCGCTGCTGACCGCTGTGTACTTTCCCTTGGAGGCCAAACCGTTGCTCTGGCTCTGGAGGTGAAAGCGTCCTGTGCTGACTGCTTATTGGCGGCCTTGCCTTTCCAGGCGGCGAGGGCGGAGGCCTGGAGCGCACGGCCGTAGGAGAAGGAGAGCTTCCAAGGCCGGTGGAGGGACGTCTGGTTCATGGCGTTGAGGTTTTGGGTGGCCTCCTCTTCACTCTGACCTCCAGACAGGAAGGTGATgccGGAACGGCGGCAGGAACGGTGCGTCTCAAGGCGGTGACGGTGGCCATGCCAACCTCCTGGGGGGTGAACTTCTTGGGGCAGGAGTGTCCAGCAGTGACCATGTTAGGCTTCAACTGTTGGCAGATACTGGCGTATCTGGCGAGGACATTGGCATTCTCTGCGATGGCGAGGGCCGAGGGGCAGGCGTCGGAGATCTTGAGCACACACCTCCATTTGGCGAAGTCGCAACCGTCCTTCTTGTACTGAGCACAACGCTCAGAGAGTCCATCAAGACCTGATGAGAGAAGGAtgatattatactgaacaaaatataaaaaacacaacatgcaacaatttccaagatttagagttcataaggaaatcagtcaattgaaaaattcattaggccctagtctatggatttcacctgtttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591293 lncRNA upstream 136259 25420334 ~ 25421319 (+) True G2265454
TU2591299 lncRNA upstream 155581 25354526 ~ 25401997 (+) True G2265460
TU2591356 lncRNA upstream 188758 25362932 ~ 25368820 (+) True G2265513
TU2591291 lncRNA upstream 235967 25320864 ~ 25321611 (+) True G2265452
TU2591292 lncRNA upstream 243499 25311128 ~ 25314079 (+) True G2265453
TU2591579 lncRNA downstream 233025 25816909 ~ 25819292 (+) True LOC110504413
TU2591607 lncRNA downstream 240487 25824371 ~ 25824729 (+) True G2265698
TU2591609 lncRNA downstream 252037 25835921 ~ 25836374 (+) True G2265700
TU2591652 lncRNA downstream 367768 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 394001 25977885 ~ 25978096 (+) True G2265743
XR_005041144.1 mRNA upstream 6029 25540976 ~ 25551549 (+) True LOC118946013
XM_036970123.1 mRNA upstream 20588 25517933 ~ 25536990 (+) False LOC110504832
XM_036970124.1 mRNA upstream 20588 25517933 ~ 25536990 (+) True LOC110504832
XM_036970071.1 mRNA upstream 248936 25304278 ~ 25308642 (+) True LOC110504297
XM_036970479.1 mRNA upstream 342198 25202079 ~ 25215380 (+) True hmgxb3
XM_036970482.1 mRNA downstream 4467 25588351 ~ 25607112 (+) False LOC110504411
XM_036970483.1 mRNA downstream 4467 25588351 ~ 25607112 (+) True LOC110504411
XM_021583689.2 mRNA downstream 21642 25605526 ~ 25611169 (+) True LOC110504842
NM_001124581.1 mRNA downstream 31308 25615192 ~ 25616315 (+) True mif
XM_021583696.2 mRNA downstream 43696 25627580 ~ 25630292 (+) False LOC110504846
TU2591263 other upstream 313249 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1366543 24190750 ~ 24191035 (+) True G2264345
TU2589998 other upstream 1367226 24190073 ~ 24190352 (+) True G2264344
TU2589847 other upstream 1676546 23880781 ~ 23881032 (+) True G2264210
TU2589730 other upstream 1693605 23855609 ~ 23863973 (+) False G2264113
TU2591497 other downstream 41261 25625145 ~ 25626856 (+) False G2265625
TU2591501 other downstream 41261 25625145 ~ 25626856 (+) True G2265625
TU2591580 other downstream 240156 25824040 ~ 25825540 (+) True LOC110504852
TU2591669 other downstream 394251 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 705841 26289725 ~ 26292004 (+) False LOC118946064

Expression Profile