RNA id: XM_021583706.2


Basic Information

Item Value
RNA id XM_021583706.2
length 2023
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110504848
representative False

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25665730 ~ 25670755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTATCCGGCTGGGAATTGCAAATCCCGTAGAGAAGAACGTCTCATTATCGCGAGATGGAGAATCAACATGGCTCGCTTCCATAGATTTCGCTAGCCATTTTAGTCAATTGAAAAATCCCAAAATCTGAGAGTTTGAGTTATCTACTCGAATTTCAAATGACTCGACCAATAAAGCAAGTACTGTAGCTACATACAGTAATTGCTCTTCCAGGTTTCTTGCGTCTTTGTTAAccagctagctagataacgttaaCTGAGTCTGCCATCCAGAGCTACCCTTGTTCAGCTGTCTAGCTATCTTGATTTGCCTGGCTGCACTCGTCACAGTCTTCAGTGTTTGTTTTAAGTGACATCCTCCTCTTCACCACCCCACCTGATTGACAGCAAAGAAGTGCTCCTCTCCTTGGGACTCGGTGTAACCCTCCACCCTATCTACCCCTGTTGCCCCCAGAGCAGGGGGTAAGGACACCACCGTCGCCACAATGCTGGAGTCTGTAAGGAACACGTTTCACGCCCAGCTGGCCACCGTCATGGACTCCCTGCTGGCGGCAGCGGTGTGTGAGATCGCAAAAATCTTTGAGAGCAGTCTGTGtgagcagcaggaggagctgacacagagaggagaggagatcacAGGCCTGAGGGGGAGGCTGGAGCGGGCAGAGAGGAGGCtgaagaaggaaggagaggaagaagaaggagatgGCCTACTGGATGTGGTAGAAGGACCAGTGAGAAAAACAGGAGGAGATGGCAGCCCAGGGCAGCAGTCTGAACCAAGAGCTGGTTCAAGCTGGGATTCGGATGCGGCCTCTGAGACCCCTCCACTGGTCCAGGACAGCGGATGTAAGAAGTCCCACAGGATGAAAAAGGAGAGAACTGAGCTGGAGGGGTCCTCCATCAAAGAAGAGCTTAAACATTGCCCTCTTCCACAGTTCGAGGAGCCCCACCCTGCCCCTGTGGAGGGGGAGGGCCAAGGGCCAGGGAGGAGCTCTTCTGCTGGAGGTCAGAGGCTGGGAGAACCCTTGTCTGACACAACAGGGACCAAGGCAAAGTTATCCCATTGGGAGGGAGACCCCAGACCTCTTCAGAGCCAGAGCTCCACCTCCTTCTTCCATGGCCCCCGGGTTGGACATTTCTCTCCCAGACCCGACCACAGGTCTCCTGGGCTTGACCCCTGGGCCAGTGGGGTTCCTCTAGAGCTTCAGGATCCAAGCTTCCTGGACCAGAGCCCAGACCAGGTACTAGAGCAGAGAGAGCCCCGGCAGTCACAGGACCAAACCAACCAATCCCAGAGAGGCTTGAGACCAAGAGACGACAGAGGGAGGGGCCTAGTTCATCAGAACCGCTGGTCATTGGCTGCCAAGGATCCAGTCAGACCACACCCCAACGCACATACTCAGAAACACGCACAaggtcacgcacacacactgggcGGGGCGAGACCCTACACTTGCCCGTACTGCGGCAAGAGCTTCAGCTACCCGTCCCACCAGCGCAGGCACCTGCTGCGCCACACAGGGGTGAGGATGTACCCCTGCTTGGTATGCGACAAGAGCTTCCTGACTCCGTCAGAGCTCACGGTGCATACCCGCGTCCACACAGGGGAAAGACCGTTTGGCTGCACCCAGTGTGGAAAGCGTTTTGCCCGCAGCGGGAACCTCCGGGCCCACCAGAGAGACGTCCACCTGGGGAAGAGACCCTTTGTCTGCCAGGAGTGTGGCAAGAGGTTCGCCCACAGGGGCAACCTGAGGGTGCACTACCAGAGGGTACACCAGGGCCTGCCATACCATGAGGATGAGTATGACCAGGATGGCAACACTCTCCCCTCTACTGGGTAAAGGGTCAACAGGGTCACATTCAGTAGGAGCTAATGGGagaaacattttaaaatggaaaATGAGTGTTcttgcagtgcatttggaaaatattcagaccccttgactttttccacattttattatgttatagccttattctaaaattgattaaattgttatttttctcaatctacactcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591462 lncRNA upstream 79002 25581993 ~ 25586728 (+) False si:dkey-74k8.4
TU2591463 lncRNA upstream 81846 25557578 ~ 25583884 (+) False si:dkey-74k8.4
TU2591466 lncRNA upstream 83248 25557578 ~ 25582482 (+) False si:dkey-74k8.4
TU2591477 lncRNA upstream 83748 25581542 ~ 25581982 (+) False si:dkey-74k8.4
TU2591293 lncRNA upstream 244411 25420334 ~ 25421319 (+) True G2265454
TU2591579 lncRNA downstream 148091 25816909 ~ 25819292 (+) True LOC110504413
TU2591607 lncRNA downstream 155553 25824371 ~ 25824729 (+) True G2265698
TU2591609 lncRNA downstream 167103 25835921 ~ 25836374 (+) True G2265700
TU2591652 lncRNA downstream 282834 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 309067 25977885 ~ 25978096 (+) True G2265743
XM_021583702.2 mRNA upstream 1730 25654381 ~ 25664000 (+) False LOC110504847
XM_021583700.2 mRNA upstream 1730 25654500 ~ 25664000 (+) False LOC110504847
XM_036970454.1 mRNA upstream 1730 25654500 ~ 25664000 (+) False LOC110504847
XM_021583701.2 mRNA upstream 1730 25654518 ~ 25664000 (+) False LOC110504847
XM_021583699.2 mRNA upstream 1730 25654639 ~ 25664000 (+) True LOC110504847
XM_036970028.1 mRNA downstream 11375 25680193 ~ 25703747 (+) False LOC110504850
XM_036970030.1 mRNA downstream 11375 25680193 ~ 25703747 (+) True LOC110504850
XM_036970031.1 mRNA downstream 34937 25703755 ~ 25709204 (+) True LOC118946024
XM_036970073.1 mRNA downstream 72645 25741463 ~ 25744514 (+) True LOC118946029
XM_036969804.1 mRNA downstream 88071 25756889 ~ 25820010 (+) False LOC110504413
TU2591497 other upstream 38874 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 38874 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 79663 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591263 other upstream 421401 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1474695 24190750 ~ 24191035 (+) True G2264345
TU2591580 other downstream 155222 25824040 ~ 25825540 (+) True LOC110504852
TU2591669 other downstream 309317 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 620907 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 620907 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 620907 26289725 ~ 26291556 (+) False LOC118946064

Expression Profile