RNA id: XM_036970030.1


Basic Information

Item Value
RNA id XM_036970030.1
length 2928
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110504850
representative True

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25680193 ~ 25703747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCTcgctaccactctctctccctcacacacacacgcgtgcgctTTCACACACATCCATACGCCAGAGCTGACACTGCAGCAGAAAAACAGCCTGGTAGCGAAAGAGAGGGACTCCATTGACTGTGAGAGAGGACTGTCTTCATGGAGGCTCTATCGAGGAGTACCTGACCAGAGGcaatgggctgtgtgtgtgtgtgttaatgtgttaggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagcaccccaGCAAGAGAAGCAGCACTGCAGATACTGACTGAGTCCGGGGCTCAGCTTGGAGCATCGACCGAGAAACGAAGATCCATTGCTCtcaacctctgtgtgtgtgtgtgtcagtgaacgTGTATGTTTGTGTAAGAGCTGGTGTGTCATTCACTGCTCTGCCTGCGTATCCTTGCGTATCTGTGTCGTCggccctctccctgtcccagaATGCTTCATTCTGCGCCCCTGTGCTGAGGAGGCGTTGGGCAGTATGGACTGTGCGCTGGCCGGGACCCCCCCCCACGGATCTAGGCTGCCCCCCCAGGACGGGCACACACTGCACCTCTGCTGATGGGCGAGGACACTGACACCACCCGAACACTGAACCACAGCTTCCTCCGAGACCACAACTATGTGACTGAAGCTGATATCATCTCCACTGTTGAGTTCAACCACACTGGAGAGCTTCTGGCCACTGGGGACAAGGGGGGACGTGTGGTCATCTTCCAGAGGGAACCTgagggtaagACAGAGCCATTCTCCCAGGGGGAGTATAATGTCTACAACACCTTCCAGAGTCATGAGCCGGAGTTTGACTACCTGAAGAGTctggagatagaggagaagaTCAACAAGATACGATGGCTGCCACAGCAGAACGCCGcccacttcctcctctccaccaatGATAAGACCGTTAAGCTGTGGAAGGTGAGTGAGCGGGACAAGAGGCCTGAAGGCTACAACCTGAAGGATGAGGAGGGCAGGATGAAGAACCTCTCCACTGTCACCTCACTACAGGTGCCGGTGTTGAAGCCCATGGATCTGATGGTGGAGGTGAGTCCTCGGCGTGTCTTTGCCAACGCCCACACCTACCATGTCAACTCCATCTCCGTCAACTCTGACCATGAGACCTACATGTCAGCTGACGACCTGAGGATCAACCTCTGGCACCTGGGCATCACCAACCGCAGCTTCAACATCGTGGACATCAAGCCAGTGAACATGGAGGATCTGACAGAGGTGATAACAGCAGCAGAGTTCCACCCTCACCACTGTAACCTGTTGGTCTATAGCAGCAGTAAGGGAACTCTACGGCTCTGTGACATGAGAGAGGCCGCACTGTGTGACAAACACTCCAAACTGTTTGAGGAGCCGGAAGACCCCAGTAACCGCTCCTTCTTCTCTGAGATCATCTCGTCTGTGTCGGACGTGAAGTTCAGCCACAGTGGGCGCTACCTGCTGACCAGAGACTACCTCACTGCCAAGGTGTGGGACCTCAACATGGAGAACAAGCCCCTGGAGATATACCAGGTGCATGAATACCTCCGCAGCAAGCTTTGCTCCCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAGTGTGTCTGGAACGGCTCAGACAGTGTGATCATGACTGGGGCCTACAACAACTTCTTCCGGATGTTTGACCGGAACACCAAACGCGACGTGACCCTGGAGGCGTCCAGGGAGAGCAGTAAGCCCCGGGCCGTGCTCAAGCCTCGCCGCGTCTGCCAGGGCGGGAAACGACGCAAGGATGACATCAGCGTAGACAGCCTGGACTTCACCAAGAAGATCCTGCACACGGCCTGGCACCCCACGGAGAACATCATCGCCATCGCTGCCACCAACAACCTGTACATCTTCCAGGACAAACTCAACCAGGAGATgcatggctgagagagagagagagcaggatgctggagacatacacacacacacacacacactgatgcacaCATTCATTCAGACAGTAAGGCAAGCAAGAACATataacatatgcacacacacacacactctctctctctctctctagatgacAGGGAGACGCTGTAAAGACACACTCCACAGTTCTCAGTGGATGGACCGGTCCACCCtaggtaccagacagggggagctGGATAACCCAATAAGAATGATGCTGGATTATGGTTTATGGAATTCTAAATCATGGATGTGTTGACTGTTGACCTCTGGATTGTGGctgatctgatggtgtttgttTTGCTATTGGTCATTTTTGCATTCTGAGGGGTTTGACCTCTTGACAGGAGGAGCTTTCACATGTGTCTGCCTTTTTCTGATCatctgcctcttcctctccttcctcttcctcctcactctGTTTCTGTACATGTctgtgctcagtcctctcctacAGTCTGGACTGATTCTTGACGTTAGTGTAAAAACCCTTTGTGGTTCCtggtggtaactagtggaaatgTTTGCGGAATGTTTGAAGTCTAATTctagtttttttttgttaaatcatgttacatgttacatgaTTTGAATGATCATTAATGATGATGGTAAAAGTGATGACAATGACAGTTAATGGTACACGAGACATTAGTCAGTAGGACATTGGGTTCCACAAGGCTGCCTGTCACCCCTAGGTGACATTTAATCCTGATGTTTCAGTTGACTGTGAAGACTGCTGGGGAACTTGGCTGTGTCGTGCTACTTTGCAATGAAACACAAGGAATGAAGCAAAAATCAAGTCCAGCAATCAAGCAAAAAAATATGCTGCAtgatggattttttttttgtttatataCATTTACTGGCTGCCTTTCTAACCATAAACAG

Function

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2591462 lncRNA upstream 93465 25581993 ~ 25586728 (+) False si:dkey-74k8.4
TU2591463 lncRNA upstream 96309 25557578 ~ 25583884 (+) False si:dkey-74k8.4
TU2591466 lncRNA upstream 97711 25557578 ~ 25582482 (+) False si:dkey-74k8.4
TU2591477 lncRNA upstream 98211 25581542 ~ 25581982 (+) False si:dkey-74k8.4
TU2591293 lncRNA upstream 258874 25420334 ~ 25421319 (+) True G2265454
TU2591579 lncRNA downstream 113162 25816909 ~ 25819292 (+) True LOC110504413
TU2591607 lncRNA downstream 120624 25824371 ~ 25824729 (+) True G2265698
TU2591609 lncRNA downstream 132174 25835921 ~ 25836374 (+) True G2265700
TU2591652 lncRNA downstream 247905 25951652 ~ 25951961 (+) True G2265731
TU2591668 lncRNA downstream 274138 25977885 ~ 25978096 (+) True G2265743
XM_021583704.2 mRNA upstream 9438 25665730 ~ 25670755 (+) False LOC110504848
XM_021583705.2 mRNA upstream 9438 25665730 ~ 25670755 (+) False LOC110504848
XM_036970216.1 mRNA upstream 9438 25665730 ~ 25670755 (+) True LOC110504848
XM_021583706.2 mRNA upstream 11375 25665730 ~ 25668818 (+) False LOC110504848
XM_021583699.2 mRNA upstream 16193 25654639 ~ 25664000 (+) True LOC110504847
XM_036970031.1 mRNA downstream 8 25703755 ~ 25709204 (+) True LOC118946024
XM_036970073.1 mRNA downstream 37716 25741463 ~ 25744514 (+) True LOC118946029
XM_036969804.1 mRNA downstream 53142 25756889 ~ 25820010 (+) False LOC110504413
XM_036969803.1 mRNA downstream 116688 25820435 ~ 25838497 (+) False LOC110504852
XM_036969802.1 mRNA downstream 116741 25820488 ~ 25838497 (+) False LOC110504852
TU2591497 other upstream 53337 25625145 ~ 25626856 (+) False G2265625
TU2591501 other upstream 53337 25625145 ~ 25626856 (+) True G2265625
TU2591464 other upstream 94126 25581993 ~ 25586067 (+) True si:dkey-74k8.4
TU2591263 other upstream 435864 25215651 ~ 25244329 (+) True G2265425
TU2589999 other upstream 1489158 24190750 ~ 24191035 (+) True G2264345
TU2591580 other downstream 120293 25824040 ~ 25825540 (+) True LOC110504852
TU2591669 other downstream 274388 25978135 ~ 25978638 (+) True G2265744
TU2592624 other downstream 585978 26289725 ~ 26292004 (+) False LOC118946064
TU2592627 other downstream 585978 26289725 ~ 26291661 (+) False LOC118946064
TU2592632 other downstream 585978 26289725 ~ 26291556 (+) False LOC118946064

Expression Profile